PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00378.1.g00190.1.sm.mkhc
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 265aa    MW: 29020.4 Da    PI: 6.0583
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00378.1.g00190.1.sm.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding60.92.7e-191461148
                                    TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                 Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                    rg+W++eEd++lv +++q+G ++W++ ++  g+ R++k+c++rw +yl
  Zpz_sc00378.1.g00190.1.sm.mkhc 14 RGAWSPEEDQRLVAYIQQHGHPNWRALPKQAGLLRCGKSCRLRWINYL 61
                                    89******************************99************97 PP
2Myb_DNA-binding53.17.1e-1767112148
                                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                 Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                     rg+++++E+el+++++++lG++ W++Ia+ ++ gRt++++k+ w+++l
  Zpz_sc00378.1.g00190.1.sm.mkhc  67 RGNFSADEEELIIRLHQELGNR-WSAIAAQLP-GRTDNEIKNVWHTHL 112
                                     89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.1E-24564IPR009057Homeodomain-like
PROSITE profilePS5129417.385961IPR017930Myb domain
SuperFamilySSF466897.49E-3011108IPR009057Homeodomain-like
SMARTSM007172.1E-131363IPR001005SANT/Myb domain
PfamPF002492.3E-161461IPR001005SANT/Myb domain
CDDcd001671.11E-101661No hitNo description
PROSITE profilePS5129425.30262116IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.1E-2765116IPR009057Homeodomain-like
SMARTSM007175.5E-1566114IPR001005SANT/Myb domain
PfamPF002491.3E-1567112IPR001005SANT/Myb domain
CDDcd001676.45E-1169112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MGRAPCCAKE GLRRGAWSPE EDQRLVAYIQ QHGHPNWRAL PKQAGLLRCG KSCRLRWINY  60
LRPDIKRGNF SADEEELIIR LHQELGNRWS AIAAQLPGRT DNEIKNVWHT HLKKRLQDAS  120
SGGRKKKQAR KSKTAKKAAQ EATAAVDGDE PSQFTVASPE LSSSVSSGVT CSTATESTAA  180
ASSADNAATT SASQVALKAE TESFSTAEFP PIDESFWASS DVMDMDLGAM DEELGLASSA  240
ATRDEDMEFW KMLLESGDMR DLTVM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A1e-25121162105MYB PROTO-ONCOGENE PROTEIN
1h8a_C2e-251211625128MYB TRANSFORMING PROTEIN
1mse_C1e-25121162105C-Myb DNA-Binding Domain
1msf_C1e-25121162105C-Myb DNA-Binding Domain
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1112126KKRLQDASSGGRKKK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in cold stress response (PubMed:14675437, PubMed:20807373, PubMed:22246661). Regulates positively the expression of genes involved in reactive oxygen species (ROS) scavenging such as peroxidase and superoxide dismutase during cold stress. Transactivates a complex gene network that have major effects on stress tolerance and panicle development (PubMed:20807373). {ECO:0000269|PubMed:14675437, ECO:0000269|PubMed:20807373, ECO:0000269|PubMed:22246661}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00378.1.g00190.1.sm.mkhc
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold stress. {ECO:0000269|PubMed:14675437, ECO:0000269|PubMed:20807373, ECO:0000269|Ref.2}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHF6794081e-139HF679408.1 Saccharum hybrid cultivar Co 86032 mRNA for ScMYB2 protein.
GenBankJQ2554781e-139JQ255478.1 Saccharum hybrid cultivar Co 86032 MYB46 (MYB46) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025798367.11e-132transcription factor MYB30-like
SwissprotQ7XBH43e-81MYB4_ORYSJ; Transcription factor MYB4
TrEMBLA0A0A9PE011e-134A0A0A9PE01_ARUDO; Uncharacterized protein
STRINGPavir.J09313.1.p1e-136(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP7938563
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23250.14e-72myb domain protein 15
Publications ? help Back to Top
  1. Park MR, et al.
    Supra-optimal expression of the cold-regulated OsMyb4 transcription factor in transgenic rice changes the complexity of transcriptional network with major effects on stress tolerance and panicle development.
    Plant Cell Environ., 2010. 33(12): p. 2209-30
    [PMID:20807373]
  2. Soltész A, et al.
    The rice Osmyb4 gene enhances tolerance to frost and improves germination under unfavourable conditions in transgenic barley plants.
    J. Appl. Genet., 2012. 53(2): p. 133-43
    [PMID:22246661]