PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Zpz_sc00375.1.g00250.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
|
||||||||
Family | TCP | ||||||||
Protein Properties | Length: 285aa MW: 30725.4 Da PI: 8.1364 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 93.1 | 5.9e-29 | 43 | 111 | 3 | 71 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssas 71 g+kdrhsk+ T +g+RdRRvRls+++a++++dLqd+LG+ ++sk ++WLl +a ++i++l+ ++++++ Zpz_sc00375.1.g00250.1.am.mk 43 GGKDRHSKVKTVKGLRDRRVRLSVPTAIQLYDLQDRLGLNQPSKVVDWLLSAARHEIDKLPPLQFPPQD 111 78*************************************************************999882 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 9.2E-27 | 44 | 105 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 29.704 | 44 | 102 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 285 aa Download sequence Send to blast |
MISGSNRQAA DEEQARNHAA LASSRQWSAQ TESRIVRVSR VFGGKDRHSK VKTVKGLRDR 60 RVRLSVPTAI QLYDLQDRLG LNQPSKVVDW LLSAARHEID KLPPLQFPPQ DLMVGHLPAP 120 MPLMHEEKFD QLAAAAAALA RERAKAGHGD GAADAEGSGA HNMGRFPNIG YHHFMGLNSS 180 FAMVNSTMAY SNYSGEAWNI NMHENSAAGS PHVAAVATAA AAGAQHSSLL SLAPGPHQLV 240 FYPSEGDQQF QVDNLAGAQH SSLLSLAPVS HQLVFYPSEG DRSSK |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 3e-20 | 49 | 103 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 3e-20 | 49 | 103 | 1 | 55 | Putative transcription factor PCF6 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00008 | PBM | Transfer from 496250 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Zpz_sc00375.1.g00250.1.am.mk |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | BT085548 | 1e-113 | BT085548.1 Zea mays full-length cDNA clone ZM_BFc0031O04 mRNA, complete cds. | |||
GenBank | BT085813 | 1e-113 | BT085813.1 Zea mays full-length cDNA clone ZM_BFc0067G09 mRNA, complete cds. | |||
GenBank | BT086223 | 1e-113 | BT086223.1 Zea mays full-length cDNA clone ZM_BFc0133E08 mRNA, complete cds. | |||
GenBank | EU970217 | 1e-113 | EU970217.1 Zea mays clone 342355 TCP family transcription factor containing protein mRNA, complete cds. | |||
GenBank | KJ728008 | 1e-113 | KJ728008.1 Zea mays clone pUT6143 TCP transcription factor (TCP30) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025814168.1 | 1e-116 | transcription factor PCF5-like | ||||
Refseq | XP_025814169.1 | 1e-116 | transcription factor PCF5-like | ||||
TrEMBL | A0A3L6SMS6 | 1e-118 | A0A3L6SMS6_PANMI; Transcription factor PCF5-like | ||||
STRING | Pavir.J15913.1.p | 1e-116 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2490 | 35 | 84 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G60970.1 | 4e-41 | TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5 |