PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00375.1.g00150.1.sm.mkhc
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family CPP
Protein Properties Length: 518aa    MW: 55977.7 Da    PI: 8.9514
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00375.1.g00150.1.sm.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR40.84.6e-13156194241
                             TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 
                                     +kk CnC++s+Clk+YCeCfa+g++C+  C+C++C+N+ e
  Zpz_sc00375.1.g00150.1.sm.mkhc 156 KKKCCNCRNSRCLKLYCECFASGSYCDG-CNCTNCFNNLE 194
                                     799*************************.********976 PP
2TCR50.63.8e-16239278140
                             TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                                     k++kgC+Ckks+ClkkYCeCf+a+  Cse+CkC dCkN e
  Zpz_sc00375.1.g00150.1.sm.mkhc 239 KHNKGCHCKKSSCLKKYCECFQANILCSENCKCIDCKNFE 278
                                     589***********************************65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011141.3E-14155195IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163435.987156279IPR005172CRC domain
PfamPF036383.7E-9157192IPR005172CRC domain
SMARTSM011141.4E-19239280IPR033467Tesmin/TSO1-like CXC domain
PfamPF036389.7E-13242277IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 518 aa     Download sequence    Send to blast
MAGKDRSGGG PPQLPPMPAV STQPPIKKLV RQLDFNSAAM AGNPAMAAAA AAAVSRALQP  60
RAVHVGFPLQ QHPRAAAPLG VSQQLQHRGL PVLRPHHVVG HLPLPRMAVT VPVPQLRPIP  120
VQPVLRPPVA VSLKPESPKP WAKLNEGKDG TGTPTKKKCC NCRNSRCLKL YCECFASGSY  180
CDGCNCTNCF NNLENDVARR EAIDATLERN PDAFRPKIGS SPLANRSNEA SGDLPLIGKH  240
NKGCHCKKSS CLKKYCECFQ ANILCSENCK CIDCKNFEGS EERKALFQGD HKNAIHMQQA  300
ANAAVNGAIG VAGFPSPSAS RKRKHIDPSL DRSNRQHVAN KNCQLPQNAI PDGSVPIDQS  360
VHPPTLGPFK VTYRPLLADI VQADDIKELC KLLVVVSGEA AKAYTGRKTQ EEKEAKEEDN  420
KAGPGMSTNH DREENNQDTD KKTLINDTSS GGIHTDKTLQ EEYRTNCADD QKSKERYSMA  480
IKTEASGHPG QVTGVSRVPY SKLDVPAVVK TFPQSSSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A4e-3016028814132Protein lin-54 homolog
5fd3_B4e-3016028814132Protein lin-54 homolog
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00375.1.g00150.1.sm.mkhc
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008657203.10.0protein tesmin/TSO1-like CXC 5
RefseqXP_025815944.10.0LOW QUALITY PROTEIN: protein tesmin/TSO1-like CXC 5
TrEMBLA0A3L6SJ420.0A0A3L6SJ42_PANMI; Protein tesmin/TSO1-like CXC 5 isoform X1
STRINGPavir.Eb03237.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP47303657
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.12e-79Tesmin/TSO1-like CXC domain-containing protein