PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc00370.1.g00260.1.am.mk

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

TCP

Protein Properties

Length: 348aa MW: 35361.3 Da PI: 9.167

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc00370.1.g00260.1.am.mk	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	128	9.8e-40	56	149	2	94
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssss 81 ++k+++++++hTkv+gR+RR+R++a caar+F+L++eLG+++d++tieWLlqqa+pa++++tgt++++a+++ + s +ss Zpz_sc00370.1.g00260.1.am.mk 56 PPKRSSTKDRHTKVDGRGRRIRMPAICAARVFQLTRELGHKTDGETIEWLLQQAEPAVIAATGTGTIPANFTsLNISLRSS 136 689******************************************************************999888888888 PP TCP 82 asnsssgkaaksa 94 +s+ s++++ ++a Zpz_sc00370.1.g00260.1.am.mk 137 GSSFSIPAHLRAA 149 8877777555544 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	6.7E-39	61	178	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	27.675	62	116	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 348 aa Download sequence Send to blast
MDITGDTGGG RRPNFPLQLL EKKEEQPSST SPAAAGGPNG SAAAQGGELQ VRKVEPPKRS 60 STKDRHTKVD GRGRRIRMPA ICAARVFQLT RELGHKTDGE TIEWLLQQAE PAVIAATGTG 120 TIPANFTSLN ISLRSSGSSF SIPAHLRAAG LPGSRFGGAR GDAWDRVVGL GFGGGGAEGP 180 ASATSSASSP LLLSFHSGSV AAAGGGTESI WTFPQSGSGG AATVYRGVPS GLHFMNFPAP 240 MALIPGGQQL GLAAPVGGGT DNGGGGEGHM GVLAALNASR AQAVTVAAQN GAEGSRNRNA 300 PTACIQHGSD HAMSAYWYYP RAAPTATNQP QPVPNFPFPQ LDDHGADA

Sequence ? help Back to Top

Protein Sequence Length: 348 aa Download sequence Send to blast

MDITGDTGGG RRPNFPLQLL EKKEEQPSST SPAAAGGPNG SAAAQGGELQ VRKVEPPKRS  60
STKDRHTKVD GRGRRIRMPA ICAARVFQLT RELGHKTDGE TIEWLLQQAE PAVIAATGTG  120
TIPANFTSLN ISLRSSGSSF SIPAHLRAAG LPGSRFGGAR GDAWDRVVGL GFGGGGAEGP  180
ASATSSASSP LLLSFHSGSV AAAGGGTESI WTFPQSGSGG AATVYRGVPS GLHFMNFPAP  240
MALIPGGQQL GLAAPVGGGT DNGGGGEGHM GVLAALNASR AQAVTVAAQN GAEGSRNRNA  300
PTACIQHGSD HAMSAYWYYP RAAPTATNQP QPVPNFPFPQ LDDHGADA

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc00370.1.g00260.1.am.mk

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006655935.1	1e-103	PREDICTED: transcription factor TCP14-like
TrEMBL	A0A0A8Y7R2	1e-113	A0A0A8Y7R2_ARUDO; Uncharacterized protein
STRING	GRMZM2G142751_P01	1e-104	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3744	34	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69690.1	4e-46	TCP family protein