PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00363.1.g00460.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family CO-like
Protein Properties Length: 815aa    MW: 89307.8 Da    PI: 9.6977
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00363.1.g00460.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box17.77.4e-06373408938
                      zf-B_box   9 HeekelqlfCedCqqllCedClleeHkg......Ht 38 
                                   + + +++++C  ++ +lC+ C  + H+       H+
  Zpz_sc00363.1.g00460.1.am.mk 373 CLRRRARWYCAADDAFLCQACDASVHSAnplarrHE 408
                                   667789********************6566766776 PP
2CCT66.19.7e-23751794144
                           CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                                   Rea+++RY+eKr+tR+F KkirYe+RK +Ae+RpR+KGrFvk++
  Zpz_sc00363.1.g00460.1.am.mk 751 REARVSRYREKRRTRLFAKKIRYEVRKLNAEKRPRMKGRFVKRP 794
                                   9*****************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003363.9E-6367412IPR000315B-box-type zinc finger
CDDcd000215.30E-7372412No hitNo description
PfamPF062031.1E-17751793IPR010402CCT domain
PROSITE profilePS5101715.993751793IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 815 aa     Download sequence    Send to blast
MAGTSSLTVV PATEDKSLTV SNPSRSAHRN HRKNPNSPCR PPSARGRRLA PQARFCHPQR  60
GPHRALPSPG HKECQVRLLV LFPFPAPFPF VNKRRELLLP SNPINRRGRA RASPGLSEHL  120
PDAGWLGLGT ALRSTLVGRT AHCGAAAAVR RSPAKWQVNA RIHQSGRLIG PAKMGACGAG  180
QEGAAWDEEE GKRHRSAPSL PRRGEGGNAW SERDAAVGLD FGIVGFEKTQ RPLLAYYNTD  240
TGRALRPVAS PRQRWRHRIR PTPGCGTGYT PGWEGARRIV VMCFLEGWTK GWARRDFSLE  300
VSSSGPTLVS PTCRRSKPWP PEKSRYFQRA NCVSDKACAW ALASTLKVES TLVTAAEVSR  360
KEHLLGQAAL IRCLRRRARW YCAADDAFLC QACDASVHSA NPLARRHERL RLRPTSPPQH  420
ESSLDQAIAA RSTSTQRRPV APAWSRRKAR SRRPQVKSVG QLLSRKLVVP ELAAESSEER  480
KAEEDGSEET QLLCHRVPSF DRALAELCSP LPVDDAAAAV SSSRDNIDAA VEDASKQDSM  540
DATSSPVQQL PDSLSGFGPT DAELREFAAD MEALLGQGMN DCNELDESFY MESLGLMTPV  600
EDDGGRVKME PHGDITNCDG ALGIGRHTDM KSVASAEVLD IDSKIPNCCS PTAVDDEDYE  660
DSFEQKAPMA SNGDAPDAQF LRRSLDLRLN YEAIIESWGT SPWTDGQRPC VRLDDIWPHH  720
AYHSGAWTPG GGQPPGFGPL TPPRWGTDGC REARVSRYRE KRRTRLFAKK IRYEVRKLNA  780
EKRPRMKGRF VKRPAAGAGG GAAVTPAAPC AVTTT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1761777RRTRLFAKKIRYEVRKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00363.1.g00460.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3565359e-58AK356535.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1036A10.
GenBankAK3583709e-58AK358370.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1075C13.
GenBankJQ7912389e-58JQ791238.1 Hordeum vulgare subsp. vulgare cultivar OWB-D K (K) gene, partial cds.
GenBankJQ7912399e-58JQ791239.1 Hordeum vulgare subsp. vulgare cultivar OWB-R K (K) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014661075.11e-175zinc finger protein CONSTANS-LIKE 16 isoform X1
TrEMBLA0A3S6KAH51e-178A0A3S6KAH5_9POAL; COLK
STRINGSi017124m1e-174(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32833058
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25440.12e-48B-box type zinc finger protein with CCT domain