PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc00360.1.g00020.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | SBP | ||||||||
Protein Properties | Length: 98aa MW: 10616.9 Da PI: 11.0924 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 43.2 | 1e-13 | 42 | 70 | 49 | 77 |
EEETTT--SS--S-STTTT-------S-- CS SBP 49 fhelsefDeekrsCrrrLakhnerrrkkq 77 fhelsefD+ krsCrrrL +hnerrrk + Zpz_sc00360.1.g00020.1.am.mk 42 FHELSEFDDIKRSCRRRLTGHNERRRKYA 70 **************************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51141 | 11.092 | 1 | 69 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 5.89E-11 | 40 | 73 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 1.7E-8 | 42 | 68 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 98 aa Download sequence Send to blast |
MSTGGGGPWD SLAFAVAAFA RTRMCASHAP DSGSKKRPFP LFHELSEFDD IKRSCRRRLT 60 GHNERRRKYA ADQHVGGGGG GSDHQGGRFP GNPPPLIR |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 63 | 68 | ERRRKY |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc00360.1.g00020.1.am.mk |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305|PubMed:16861571}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003560169.3 | 1e-15 | squamosa promoter-binding-like protein 13 | ||||
Swissprot | Q6Z461 | 6e-14 | SPL13_ORYSJ; Squamosa promoter-binding-like protein 13 | ||||
TrEMBL | I1GU51 | 3e-14 | I1GU51_BRADI; Uncharacterized protein | ||||
STRING | BRADI1G26720.1 | 5e-15 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP32506 | 3 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G15270.1 | 4e-13 | squamosa promoter binding protein-like 5 |