PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00357.1.g00180.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family AP2
Protein Properties Length: 354aa    MW: 38312.5 Da    PI: 7.3169
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00357.1.g00180.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP222.92.2e-07276306336
                           AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkf 36 
                                   y+GV+++++ grW A+I  +s    +k  +lg+f
  Zpz_sc00357.1.g00180.1.am.mk 276 YRGVTRHHQHGRWQARIGRVSG---NKDLYLGTF 306
                                   9***************999754...4******99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103210.85144239IPR001471AP2/ERF domain
SMARTSM003802.5E-5187245IPR001471AP2/ERF domain
SuperFamilySSF541715.17E-8203240IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.1E-7209240IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-6274308IPR016177DNA-binding domain
SMARTSM003800.0051275318IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.0E-5275308IPR001471AP2/ERF domain
PROSITE profilePS510328.992275306IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MTNTNNGGNS GGGSANNGGT NAAASGWLGF SLSPHMASSM DDHHHHHHDV QQQQHNHHHG  60
IFFPSVAAAY GLGGAGDAAV ATSGPYYAPQ LASMPLKSDG SLCIMEALRR TDQDHHGPKL  120
EDFLGAAQSQ AMALSLDNGS SFYHYGGVGV GHHHGGLLQP DAYVGPSAAP TLMADDEEAA  180
AAAATAMASW AHLWDNSCKK EGQTRKGRQG GYDMEEKAAR AYDLAALKYW GPSTHINFPL  240
EDYQEELEEM KNMTRQEYVA HLRRKSSGFS RGASMYRGVT RHHQHGRWQA RIGRVSGNKD  300
LYLGTFRHSA TPCPTVAMIS RVYTACMPTG DPFAGRVRTD VDRVILIPDH RVRV
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of adventitious (crown) root formation by promoting its initiation. Promotes adventitious root initiation through repression of cytokinin signaling by positively regulating the two-component response regulator RR1. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1. {ECO:0000269|PubMed:21481033}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00357.1.g00180.1.am.mk
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin. {ECO:0000269|PubMed:21481033}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0882631e-129BT088263.1 Zea mays full-length cDNA clone ZM_BFc0105N21 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotQ84Z029e-78CRL5_ORYSJ; AP2-like ethylene-responsive transcription factor CRL5
TrEMBLA0A0D3GLU91e-105A0A0D3GLU9_9ORYZ; Uncharacterized protein
STRINGOBART07G01750.11e-105(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP94838133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37750.11e-71AP2 family protein
Publications ? help Back to Top
  1. Kitomi Y, et al.
    The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling.
    Plant J., 2011. 67(3): p. 472-84
    [PMID:21481033]
  2. Li P,Xue H
    Structural characterization and expression pattern analysis of the rice PLT gene family.
    Acta Biochim. Biophys. Sin. (Shanghai), 2011. 43(9): p. 688-97
    [PMID:21807632]