PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc00356.1.g00070.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | ERF | ||||||||
Protein Properties | Length: 339aa MW: 35767.8 Da PI: 5.2092 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 63.5 | 4.5e-20 | 147 | 198 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 +y+GVr+++ +g+++AeIrdp+ +g r++lg+++t+ eAa+a+++a+ +l+g+ Zpz_sc00356.1.g00070.1.am.mk 147 KYRGVRQRP-WGKYAAEIRDPKRRG--SRVWLGTYDTPVEAARAYDRAAFRLRGA 198 8********.**********96554..**************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 5.6E-32 | 146 | 206 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 4.6E-14 | 147 | 197 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.63E-29 | 147 | 206 | No hit | No description |
PROSITE profile | PS51032 | 24.276 | 147 | 205 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.4E-36 | 147 | 211 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.15E-23 | 147 | 206 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 1.6E-13 | 148 | 159 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.6E-13 | 187 | 207 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 339 aa Download sequence Send to blast |
MEFTGEADNF AFDFDFIREH LLGGESSGVS VASSEVSHGA SFTEQPPPSA ELQSMAFMPQ 60 QQHQGDMKHA CMGSAADPAV SAGEAAFGAQ EPPAPLVMIK FGGEPSSPAR QPLTISVPPS 120 SYAWAATGAA APVATAPAPA PVEDYRKYRG VRQRPWGKYA AEIRDPKRRG SRVWLGTYDT 180 PVEAARAYDR AAFRLRGAKA ILNFPNEVGT RGADLWAPPP APQGISANKR KRQPEEPDVE 240 VIAVLNKAAK TEVPSATSTQ VSSTASPSSM SSRETTATAS STVTSTETNE AGAGSEGFLA 300 VTPSSWSWDQ PWEAFLGGLL PLSPLSPHPS LGFPQLTVS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-25 | 146 | 210 | 4 | 68 | ATERF1 |
3gcc_A | 2e-25 | 146 | 210 | 4 | 68 | ATERF1 |
5wx9_A | 2e-25 | 147 | 207 | 14 | 74 | Ethylene-responsive transcription factor ERF096 |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc00356.1.g00070.1.am.mk |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ727525 | 9e-90 | KJ727525.1 Zea mays clone pUT5385 AP2-EREBP transcription factor (EREB61) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001140538.1 | 1e-101 | uncharacterized protein LOC100272603 | ||||
TrEMBL | B4FPJ9 | 1e-100 | B4FPJ9_MAIZE; Ethylene-responsive transcription factor ERF105 | ||||
TrEMBL | K4JFF8 | 1e-100 | K4JFF8_MAIZE; AP2-EREBP-type transcription factor (Fragment) | ||||
STRING | GRMZM5G805505_P01 | 1e-101 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP103 | 37 | 465 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G47230.1 | 2e-35 | ethylene responsive element binding factor 5 |