PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00351.1.g00160.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family SBP
Protein Properties Length: 388aa    MW: 41863.2 Da    PI: 9.8374
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00351.1.g00160.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP36.81.1e-115079130
                                  --SSTT-----TT--HHHHHTT--HHHHT- CS
                           SBP  1 lCqvegCeadlseakeyhrrhkvCevhska 30
                                  +Cq+egC+adls+ak+yhrrhkvC++   +
  Zpz_sc00351.1.g00160.1.am.mk 50 RCQAEGCKADLSSAKHYHRRHKVCSHTKSS 79
                                  6***********************865443 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.103.3E-124580IPR004333Transcription factor, SBP-box
PROSITE profilePS511418.9554873IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.83E-104977IPR004333Transcription factor, SBP-box
PfamPF031103.3E-65180IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
MSPPPAHDEG YLVVVCASEL RNLDPLGLNL GYRTYLPSRG GYMYGHHPPR CQAEGCKADL  60
SSAKHYHRRH KVCSHTKSSE ESQPSAKPSQ RLVRTLPMCG ARRSMQGSGK FVPLSHTSSS  120
FTGSCDHFPH PKTNLLETEK TEDRVRGGEV SQLGSDSDSG WGAYGLVGDD VAADGETHAG  180
AVPERGACHA RRYAASAAQD AGPRRAQPTS HLSLSLLSVR LRRSSAAAET QGSLLGSIRA  240
SSEGLNTLPT SDADVSTSIH IANDFAPSKH TYDSSQPQRH GPRLRSRTST LLLRPPTRAP  300
SPIRVSIPIR VPLCFGPCAS DLVRVTALSP RVIQRPSIVA RPVLGPCALP RARVRPPSDP  360
SSLSRHATIV DTYTAVVFEA VRFERVLW
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00351.1.g00160.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9538442e-44EU953844.1 Zea mays clone 1447544 mRNA sequence.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP7076222
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02065.26e-13squamosa promoter binding protein-like 8