PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00347.1.g00090.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 356aa    MW: 40416.6 Da    PI: 7.8108
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00347.1.g00090.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.57.5e-09155203247
                                   SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
               Myb_DNA-binding   2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47 
                                   + W+   d+l+ +a + + ++   +W+ +ar +g +++ ++++ ++qk+
  Zpz_sc00347.1.g00090.1.am.mk 155 QEWSRSQDKLFERALAVYDTDtpdRWHNVARFIGGTKSVEEVRRHYQKL 203
                                   78*********************************************97 PP
2Myb_DNA-binding31.63.9e-10269316347
                                   SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
               Myb_DNA-binding   3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47 
                                    WT++ d+l+ +a + + ++   +W+ Iar +g g+t  ++ksr+q +
  Zpz_sc00347.1.g00090.1.am.mk 269 QWTKQQDKLFEQALAVYDKEtpdRWHNIARAVGGGKTVDEVKSRFQLL 316
                                   7*****************99*************************965 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512937.262152208IPR017884SANT domain
SMARTSM007177.1E-10153206IPR001005SANT/Myb domain
SuperFamilySSF466891.06E-10155211IPR009057Homeodomain-like
PfamPF002495.5E-7155203IPR001005SANT/Myb domain
CDDcd001671.86E-6156203No hitNo description
PROSITE profilePS512937.747265320IPR017884SANT domain
SMARTSM007172.2E-9266319IPR001005SANT/Myb domain
SuperFamilySSF466893.23E-12268325IPR009057Homeodomain-like
PfamPF002492.4E-7269315IPR001005SANT/Myb domain
CDDcd001675.18E-6270317No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MPGDDSPFRH LRDLRKAVFH LMPQHGPPTL RRAASRFALD REEEQLRGIL FSDSLEHTAT  60
AFFVTIPCDE ILAPGAFLPF LFFYLLLTEL ATWPQPWRLY KSNSNEPDLS FKAPFPTNHP  120
SHRHAHTSEE DQSTLPVPHC PLIRNRTMAS NTKSQEWSRS QDKLFERALA VYDTDTPDRW  180
HNVARFIGGT KSVEEVRRHY QKLEEDVARI ESGGAPFHWY AAAAPPPART VQRGALNWTG  240
WTTPAIKLEQ ASAISLSIEM ASMSMRSSQW TKQQDKLFEQ ALAVYDKETP DRWHNIARAV  300
GGGKTVDEVK SRFQLLVHDV GRIENGEVAF PAYRCPGVGS TATAGYETDR MKHLKI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-19148356192RADIALIS
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00347.1.g00090.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0078581e-36AC007858.1 Oryza sativa (japonica cultivar-group) chromosome 5 clone BAC 10A19I, complete sequence.
GenBankAC1209881e-36AC120988.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBa0017N18, complete sequence.
GenBankAK2415281e-36AK241528.1 Oryza sativa Japonica Group cDNA, clone: J065171E20, full insert sequence.
GenBankAP0149611e-36AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
GenBankCP0126131e-36CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
GenBankCT8363541e-36CT836354.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA043L05, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A1E5UUT91e-77A0A1E5UUT9_9POAL; Protein RADIALIS-like 3
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27038230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.21e-26RAD-like 6