PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00346.1.g00170.1.sm.mkhc
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB_related
Protein Properties Length: 283aa    MW: 30261.6 Da    PI: 5.1825
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00346.1.g00170.1.sm.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.45.1e-161562148
                                    TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                 Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                    +g W++eEde+l d + ++G g+W++ +++ g++R +k+c++rw +yl
  Zpz_sc00346.1.g00170.1.sm.mkhc 15 KGLWSPEEDEKLRDFILRHGHGCWSALPAKAGLNRNGKSCRLRWINYL 62
                                    678*******************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.2E-211065IPR009057Homeodomain-like
PROSITE profilePS5129423.0031066IPR017930Myb domain
SMARTSM007171.6E-121464IPR001005SANT/Myb domain
PfamPF002494.5E-141562IPR001005SANT/Myb domain
SuperFamilySSF466893.9E-201789IPR009057Homeodomain-like
CDDcd001677.19E-111862No hitNo description
Gene3DG3DSA:1.10.10.603.3E-76689IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MGCKACEKPK PNYRKGLWSP EEDEKLRDFI LRHGHGCWSA LPAKAGLNRN GKSCRLRWIN  60
YLRPGLKHGE FSPEEEETVM SLHAALGNKE AGPSTPAPAP TATNSAADSE DSHQSVKPCA  120
DGGTAPELPT DSGSSEPRES SSVDSRCQTG PHPAAAAACR PQAPVAPKVM FADWLDMDMD  180
YISGQVAAAP VLDSAGVVRA SASPGDHHQV VSESQGSVRR RQQRVDGRCG VDVSSSVSLH  240
EFGDSGAGCW EFQEQFDGMV DQMQPAGGFC DLFTMTEFFA GLN
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00346.1.g00170.1.sm.mkhc
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHF6794121e-109HF679412.1 Saccharum hybrid cultivar Co 86032 mRNA for ScMYB6 protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004953256.11e-118transcription factor MYB4
TrEMBLK3YUK11e-117K3YUK1_SETIT; Uncharacterized protein
STRINGSi017947m1e-117(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP170737109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52260.12e-37myb domain protein 19