PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00331.1.g00070.1.sm.mkhc
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family TALE
Protein Properties Length: 383aa    MW: 40946.6 Da    PI: 5.5299
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00331.1.g00070.1.sm.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.69.1e-083253582154
                                     HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
                        Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                                     k +yp++e++++L +++gL+ +q+ +WF N+R +
  Zpz_sc00331.1.g00070.1.sm.mkhc 325 KWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 358
                                     469*****************************87 PP
2ELK26.51.5e-09279300122
                             ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                                     ELKh+L+++Y+++L+++++E++
  Zpz_sc00331.1.g00070.1.sm.mkhc 279 ELKHELKQGYKEKLIDIREEIL 300
                                     9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012552.7E-19110154IPR005540KNOX1
PfamPF037905.7E-18113153IPR005540KNOX1
SMARTSM012562.4E-26169224IPR005541KNOX2
PfamPF037913.1E-18178223IPR005541KNOX2
SMARTSM011880.004279300IPR005539ELK domain
PROSITE profilePS5121310.039279299IPR005539ELK domain
PROSITE profilePS5007111.742299362IPR001356Homeobox domain
SMARTSM003895.1E-11301366IPR001356Homeobox domain
SuperFamilySSF466895.56E-16301365IPR009057Homeodomain-like
CDDcd000862.66E-12302363No hitNo description
Gene3DG3DSA:1.10.10.604.2E-25306363IPR009057Homeodomain-like
PfamPF059201.0E-17319358IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009416Biological Processresponse to light stimulus
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MAFHGHHLPH EMSSMPHLGV DDAAVAAAAS AAAAAAGGAG GAPPPAWMRY GDGSFLHLQT  60
TSDSSASPSS AAAAAVQHWN MGAGEDAVAA MGGCGGVVVG AAEPTEADAA RSKADILAHP  120
LYEQLLSAHV ACLRVATPVD QLPRIDAQLE QSQGVVAKYS GLAAAAAAAA EDDAGRGELD  180
QFMTHYVLLL CSFKEQLQQH VRVHAMEAVM ACWELEQNLQ SLTGASPGEG TGATMSDGED  240
DQADSDANMY DPSLDGPDNM GFGLPTESER SLMERVRQEL KHELKQGYKE KLIDIREEIL  300
RKRRAGKLPG DTTSTLKAWW QSHSKWPYPT EEDKARLVQE TGLQLKQINN WFINQRKRNW  360
HSNPSSSANV KTKRKSNAGD STS
Functional Description ? help Back to Top
Source Description
UniProtIsoform 3 acts as transcription activator, but isoforms 1 and 2 do not. {ECO:0000269|PubMed:7599652}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00331.1.g00070.1.sm.mkhc
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004973169.10.0homeobox protein knotted-1-like 13 isoform X1
SwissprotQ0J6N40.0KNOSD_ORYSJ; Homeobox protein knotted-1-like 13
TrEMBLA0A0E0LTE40.0A0A0E0LTE4_ORYPU; Uncharacterized protein
STRINGOPUNC08G08730.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56438169
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.11e-163KNOTTED1-like homeobox gene 3