PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00322.1.g00600.1.sm.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 377aa    MW: 42071.2 Da    PI: 4.3209
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00322.1.g00600.1.sm.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.33.6e-133377348
                                  SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                  +W+ eEd  l   + ++G+++W++Ia+ +   +t+ qc+ rw++yl
  Zpz_sc00322.1.g00600.1.sm.mk 33 SWSVEEDAVLRSQIGLHGTDNWTLIAAQFK-DKTARQCRRRWYNYL 77
                                  6****************************9.**************7 PP
2Myb_DNA-binding44.53.6e-1483126146
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                   +g W++eEd ll +a k lG++ W+ Ia+ +  gRt++ +k+r+ +
  Zpz_sc00322.1.g00600.1.sm.mk  83 KGGWSQEEDMLLCEAQKILGNR-WTEIAKVVS-GRTDNAVKNRFST 126
                                   688*******************.*********.**********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129421.4632681IPR017930Myb domain
SuperFamilySSF466891.65E-2630124IPR009057Homeodomain-like
SMARTSM007175.6E-123079IPR001005SANT/Myb domain
CDDcd001677.07E-123377No hitNo description
PfamPF139216.4E-163494No hitNo description
Gene3DG3DSA:1.10.10.607.9E-203484IPR009057Homeodomain-like
SMARTSM007172.0E-1482130IPR001005SANT/Myb domain
PROSITE profilePS5129417.07382132IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.2E-1985131IPR009057Homeodomain-like
CDDcd001674.87E-1086127No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009553Biological Processembryo sac development
GO:0010052Biological Processguard cell differentiation
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MATGPDLSSS SSAAVPDAVP PAAAAKKDRH IVSWSVEEDA VLRSQIGLHG TDNWTLIAAQ  60
FKDKTARQCR RRWYNYLNSE CKKGGWSQEE DMLLCEAQKI LGNRWTEIAK VVSGRTDNAV  120
KNRFSTLCKR RAKDEDTYPE NGTPSSNANA KRVLTQIGYL TPDAAQSSQP TKHISSDLKD  180
NVTTNMRLFG QESTQESSMS GMASLLDELD DLIVDPYENE EEDEQKQREQ NRTIDEKDEH  240
CNASSQASKT CDEKMDNRPI HMFTETRDTE TVAEEPASEN LDEVAEDSML QCTESTPIVT  300
DFDDLIVDPY ESKEEDEQKL REQSEQIHVH DKHSNGPAET STGLTLDVAP VLKMDDGPVG  360
EKFSAFCPGI DLTWVEA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-293413110107B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00322.1.g00600.1.sm.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0634261e-103AK063426.1 Oryza sativa Japonica Group cDNA clone:001-115-D02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025799287.11e-110transcription factor MYB124 isoform X4
TrEMBLA0A2S3H4521e-109A0A2S3H452_9POAL; Uncharacterized protein
TrEMBLA0A2S3H4911e-109A0A2S3H491_9POAL; Uncharacterized protein
STRINGOPUNC07G21540.11e-107(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP89033847
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14350.22e-63MYB family protein