PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc00313.1.g00330.1.sm.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | NAC | ||||||||
Protein Properties | Length: 284aa MW: 31555.6 Da PI: 7.4432 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 161.9 | 2.5e-50 | 10 | 135 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksg 81 lppGfrF P+deelv++yL++kv++ v+ evd++++ePw+Lp +k +++ewyfFs rd+kyatg r+nratksg Zpz_sc00313.1.g00330.1.sm.mk 10 LPPGFRFYPSDEELVCHYLHNKVANAG----GVMVEVDLHTHEPWELPDVAKLSTNEWYFFSFRDRKYATGLRTNRATKSG 86 79**********************998....5789*************87788999************************* PP NAM 82 yWkatgkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128 yWkatgkd+ + +k ++++vg++ktLvfy+grap+g kt+Wvmhe+r+ Zpz_sc00313.1.g00330.1.sm.mk 87 YWKATGKDRVIRNKaaGRAVVGMRKTLVFYRGRAPNGIKTSWVMHEFRM 135 ************99888889***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.75E-59 | 7 | 154 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 57.586 | 10 | 154 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.7E-28 | 11 | 135 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 284 aa Download sequence Send to blast |
MGLRDIELTL PPGFRFYPSD EELVCHYLHN KVANAGGVMV EVDLHTHEPW ELPDVAKLST 60 NEWYFFSFRD RKYATGLRTN RATKSGYWKA TGKDRVIRNK AAGRAVVGMR KTLVFYRGRA 120 PNGIKTSWVM HEFRMENLHT PPQEDWVLCR VFYKKKADAL DYAMDNEQEL AMARSAIASR 180 KYSSSSGPGY SPPFPALGGT HYHQLPPSSD HHGAAGAGSI NDFAMALLQH NNGIFDFHPQ 240 PLDSGSSVLA AAAGASRDGE QCAGGALIDL GLEEHYSYNS LMQM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 5e-48 | 1 | 159 | 4 | 169 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 5e-48 | 1 | 159 | 4 | 169 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 5e-48 | 1 | 159 | 4 | 169 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 5e-48 | 1 | 159 | 4 | 169 | NO APICAL MERISTEM PROTEIN |
3swm_A | 6e-48 | 1 | 159 | 7 | 172 | NAC domain-containing protein 19 |
3swm_B | 6e-48 | 1 | 159 | 7 | 172 | NAC domain-containing protein 19 |
3swm_C | 6e-48 | 1 | 159 | 7 | 172 | NAC domain-containing protein 19 |
3swm_D | 6e-48 | 1 | 159 | 7 | 172 | NAC domain-containing protein 19 |
3swp_A | 6e-48 | 1 | 159 | 7 | 172 | NAC domain-containing protein 19 |
3swp_B | 6e-48 | 1 | 159 | 7 | 172 | NAC domain-containing protein 19 |
3swp_C | 6e-48 | 1 | 159 | 7 | 172 | NAC domain-containing protein 19 |
3swp_D | 6e-48 | 1 | 159 | 7 | 172 | NAC domain-containing protein 19 |
4dul_A | 5e-48 | 1 | 159 | 4 | 169 | NAC domain-containing protein 19 |
4dul_B | 5e-48 | 1 | 159 | 4 | 169 | NAC domain-containing protein 19 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc00313.1.g00330.1.sm.mk |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed post-transcriptionally by miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808, ECO:0000269|PubMed:18305205, ECO:0000305|PubMed:15723790}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU964973 | 7e-90 | EU964973.1 Zea mays clone 282884 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004954303.1 | 1e-157 | NAC domain-containing protein 92 | ||||
Refseq | XP_025824302.1 | 1e-157 | protein CUP-SHAPED COTYLEDON 3-like | ||||
Swissprot | Q9FLR3 | 1e-60 | NAC79_ARATH; NAC domain-containing protein 79 | ||||
TrEMBL | A0A2S3GUT5 | 1e-156 | A0A2S3GUT5_9POAL; Uncharacterized protein | ||||
TrEMBL | K3YUM1 | 1e-156 | K3YUM1_SETIT; Uncharacterized protein | ||||
STRING | Si017967m | 1e-157 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP697 | 38 | 166 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G28530.1 | 5e-77 | NAC domain containing protein 74 |
Publications ? help Back to Top | |||
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