PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc00313.1.g00020.1.sm.mkhc | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | G2-like | ||||||||
Protein Properties | Length: 203aa MW: 22467.3 Da PI: 6.1288 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 66.1 | 6.1e-21 | 145 | 188 | 2 | 45 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtleh 45 r+r tpeLHe+Fvea++ LGGsekAtPk+i ++mkvkgLt++h Zpz_sc00313.1.g00020.1.sm.mkhc 145 LRMRRTPELHEQFVEAINMLGGSEKATPKAIQRVMKVKGLTIYH 188 69*****************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF11107 | 1.9E-14 | 10 | 103 | No hit | No description |
SuperFamily | SSF46689 | 1.56E-7 | 141 | 189 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 9.2E-17 | 143 | 188 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.1E-12 | 144 | 187 | IPR006447 | Myb domain, plants |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 203 aa Download sequence Send to blast |
MGWAHATVAM EELLGLVRGF VDILVLAGGR TSSGAAATWS CGEVKNALRW ALFFEEVFNN 60 LRDSGQYEDS ASELDAALVE LTSSQDFPKG LAGMRSDTLS SARDIDARSL TPRNYSYCQV 120 RSVSPFNYGE VSTDTLPSNT TPTKLRMRRT PELHEQFVEA INMLGGSEKA TPKAIQRVMK 180 VKGLTIYHKY RAIQHRPESS DED |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 9e-18 | 144 | 196 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 9e-18 | 144 | 196 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 9e-18 | 144 | 196 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 9e-18 | 144 | 196 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 9e-18 | 144 | 196 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 9e-18 | 144 | 196 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 9e-18 | 144 | 196 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 9e-18 | 144 | 196 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc00313.1.g00020.1.sm.mkhc |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004954345.1 | 2e-52 | uncharacterized protein LOC101763564 isoform X3 | ||||
TrEMBL | A0A1E5V019 | 4e-53 | A0A1E5V019_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ab03274.1.p | 2e-51 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5494 | 25 | 26 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G28610.1 | 4e-22 | phosphate starvation response 1 |