PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00312.1.g00390.1.am.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 625aa    MW: 69116.9 Da    PI: 11.1211
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00312.1.g00390.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.42.2e-15387434148
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                   +g+WT+eEd+ lv  ++++G  +W++ ++  g+ R++k+c++rw +yl
  Zpz_sc00312.1.g00390.1.am.mk 387 KGPWTPEEDKVLVAHIQRFGHSNWRALPKQAGLLRCGKSCRLRWINYL 434
                                   79******************************99************97 PP

2Myb_DNA-binding537.7e-17440485148
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                   rg++T+eE++++++++++lG++ W++Ia++++ gRt++++k+ w+++l
  Zpz_sc00312.1.g00390.1.am.mk 440 RGNFTKEEEDIIIQLHELLGNR-WSAIAARLP-GRTDNEIKNVWHTHL 485
                                   89********************.*********.************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.5E-24378437IPR009057Homeodomain-like
PROSITE profilePS5129414.667382434IPR017930Myb domain
SuperFamilySSF466892.24E-30383481IPR009057Homeodomain-like
SMARTSM007173.2E-12386436IPR001005SANT/Myb domain
PfamPF002491.4E-13387434IPR001005SANT/Myb domain
CDDcd001671.10E-9389434No hitNo description
PROSITE profilePS5129426.557435489IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.8E-26438489IPR009057Homeodomain-like
SMARTSM007176.7E-16439487IPR001005SANT/Myb domain
PfamPF002491.1E-15440485IPR001005SANT/Myb domain
CDDcd001678.42E-12442485No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 625 aa     Download sequence    Send to blast
MGKYITPVAL ARVRPSELAD RDTPAAAVVV PVKATATRGR GGGFSRALAR DLFVVVLARG  60
MVTDDSKEPC WPYLLGERRW KKKACETCAR PLRTVRHRHK TTCGVDWRAF ACAARLCPSS  120
VVLSTEASCK RGRKERGRPS VRPSCKLQLD RDRSMDHAVT SGTDRCEDIC ARPPAPARLD  180
VATHAPVRWK RQIDAVPAAA AYKYNGERAS EANGDGGARI RHGCDGRPGS ERRDLRSRGC  240
GMDASVNFYE LAVSAAAAGV FPRCSFVLQL SFRSPLIFRN ERWDHGVSSP PLNCRVTPLC  300
AGQRWKLPGT AQHISARFLQ AHSAPRINTR PRRTQASAPF FPQGQRERRA YLSTRSSPQL  360
DRPGQEDLQR RRAMGRAPCC EKMGLKKGPW TPEEDKVLVA HIQRFGHSNW RALPKQAGLL  420
RCGKSCRLRW INYLRPDIKR GNFTKEEEDI IIQLHELLGN RWSAIAARLP GRTDNEIKNV  480
WHTHLKKRLE PTKQDHAPAA GASKKKQKRA GAKKTPEEVT AAATPVSPER SFSSSVTESS  540
MTEQGKTGSS GQQDAAQPTA EPSPSLRYVG VAPNSASFRL RLRLANFEPP TGLLEPGSTD  600
HGAPLRTGLP RPRRRRALVH GSSAY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A8e-273854905109B-MYB
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00312.1.g00390.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0939541e-144FP093954.1 Phyllostachys edulis cDNA clone: bphyem107b06, full insert sequence.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP7938563
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23250.14e-73myb domain protein 15