PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc00312.1.g00390.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | MYB | ||||||||
Protein Properties | Length: 625aa MW: 69116.9 Da PI: 11.1211 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 48.4 | 2.2e-15 | 387 | 434 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd+ lv ++++G +W++ ++ g+ R++k+c++rw +yl Zpz_sc00312.1.g00390.1.am.mk 387 KGPWTPEEDKVLVAHIQRFGHSNWRALPKQAGLLRCGKSCRLRWINYL 434 79******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 53 | 7.7e-17 | 440 | 485 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T+eE++++++++++lG++ W++Ia++++ gRt++++k+ w+++l Zpz_sc00312.1.g00390.1.am.mk 440 RGNFTKEEEDIIIQLHELLGNR-WSAIAARLP-GRTDNEIKNVWHTHL 485 89********************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.5E-24 | 378 | 437 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 14.667 | 382 | 434 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.24E-30 | 383 | 481 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.2E-12 | 386 | 436 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.4E-13 | 387 | 434 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.10E-9 | 389 | 434 | No hit | No description |
PROSITE profile | PS51294 | 26.557 | 435 | 489 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.8E-26 | 438 | 489 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.7E-16 | 439 | 487 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.1E-15 | 440 | 485 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 8.42E-12 | 442 | 485 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 625 aa Download sequence Send to blast |
MGKYITPVAL ARVRPSELAD RDTPAAAVVV PVKATATRGR GGGFSRALAR DLFVVVLARG 60 MVTDDSKEPC WPYLLGERRW KKKACETCAR PLRTVRHRHK TTCGVDWRAF ACAARLCPSS 120 VVLSTEASCK RGRKERGRPS VRPSCKLQLD RDRSMDHAVT SGTDRCEDIC ARPPAPARLD 180 VATHAPVRWK RQIDAVPAAA AYKYNGERAS EANGDGGARI RHGCDGRPGS ERRDLRSRGC 240 GMDASVNFYE LAVSAAAAGV FPRCSFVLQL SFRSPLIFRN ERWDHGVSSP PLNCRVTPLC 300 AGQRWKLPGT AQHISARFLQ AHSAPRINTR PRRTQASAPF FPQGQRERRA YLSTRSSPQL 360 DRPGQEDLQR RRAMGRAPCC EKMGLKKGPW TPEEDKVLVA HIQRFGHSNW RALPKQAGLL 420 RCGKSCRLRW INYLRPDIKR GNFTKEEEDI IIQLHELLGN RWSAIAARLP GRTDNEIKNV 480 WHTHLKKRLE PTKQDHAPAA GASKKKQKRA GAKKTPEEVT AAATPVSPER SFSSSVTESS 540 MTEQGKTGSS GQQDAAQPTA EPSPSLRYVG VAPNSASFRL RLRLANFEPP TGLLEPGSTD 600 HGAPLRTGLP RPRRRRALVH GSSAY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 8e-27 | 385 | 490 | 5 | 109 | B-MYB |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc00312.1.g00390.1.am.mk |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FP093954 | 1e-144 | FP093954.1 Phyllostachys edulis cDNA clone: bphyem107b06, full insert sequence. |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP79 | 38 | 563 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23250.1 | 4e-73 | myb domain protein 15 |