PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc00312.1.g00330.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | NAC | ||||||||
Protein Properties | Length: 356aa MW: 39737.1 Da PI: 8.5654 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 157.9 | 4.2e-49 | 68 | 204 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.........kvkaeekewyfFskrdkkyatgk 72 lppGfrF P+deelv++yL kkv++++ ++ evd++ ePw+Lp ++k + +ewyfFs rd+kyatg+ Zpz_sc00312.1.g00330.1.am.mk 68 LPPGFRFYPSDEELVCHYLYKKVANERAAQ-GTLVEVDLHAREPWELPGepwpvlvyhAAKLTASEWYFFSFRDRKYATGS 147 79*************************776.78**************955999998764445778**************** PP NAM 73 rknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 r+nratk+gyWkatgkd+ev s ++++vg++ktLvfy+grap+g+k+ W+mhe+rl Zpz_sc00312.1.g00330.1.am.mk 148 RTNRATKTGYWKATGKDREVRSPaTRAVVGMRKTLVFYQGRAPNGVKSCWIMHEFRL 204 **********************977788***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.57E-54 | 65 | 242 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 55.3 | 68 | 242 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.9E-27 | 69 | 204 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 356 aa Download sequence Send to blast |
MSSISALSNL PPKPAGWLEL MATLPVEYRS LLLPGQAFHL YLPGRSAGRL ADRGRQRGMG 60 LREIESTLPP GFRFYPSDEE LVCHYLYKKV ANERAAQGTL VEVDLHAREP WELPGEPWPV 120 LVYHAAKLTA SEWYFFSFRD RKYATGSRTN RATKTGYWKA TGKDREVRSP ATRAVVGMRK 180 TLVFYQGRAP NGVKSCWIMH EFRLDSPHSP PKVTFRRQTD QLLDIRPLHN TEDWVLCRVF 240 QKRKDSEQEA AGSSRAVVPL DQPVLEALTD HQTAGSSVGF APPQDNNALL SAAIWQYGSV 300 LDHQYPQEVS SSPMMTMTGL VGSRGVGDVC GFFYDAGFEE TAVNIAGVGF PQGWMG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 7e-46 | 59 | 248 | 7 | 174 | NAC domain-containing protein 19 |
3swm_B | 7e-46 | 59 | 248 | 7 | 174 | NAC domain-containing protein 19 |
3swm_C | 7e-46 | 59 | 248 | 7 | 174 | NAC domain-containing protein 19 |
3swm_D | 7e-46 | 59 | 248 | 7 | 174 | NAC domain-containing protein 19 |
3swp_A | 7e-46 | 59 | 248 | 7 | 174 | NAC domain-containing protein 19 |
3swp_B | 7e-46 | 59 | 248 | 7 | 174 | NAC domain-containing protein 19 |
3swp_C | 7e-46 | 59 | 248 | 7 | 174 | NAC domain-containing protein 19 |
3swp_D | 7e-46 | 59 | 248 | 7 | 174 | NAC domain-containing protein 19 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator of STM and KNAT6. Involved in molecular mechanisms regulating shoot apical meristem (SAM) formation during embryogenesis and organ separation. Required for the fusion of septa of gynoecia along the length of the ovaries. Activates the shoot formation in callus in a STM-dependent manner. Seems to act as an inhibitor of cell division. {ECO:0000269|PubMed:10079219, ECO:0000269|PubMed:10750709, ECO:0000269|PubMed:11245578, ECO:0000269|PubMed:12163400, ECO:0000269|PubMed:12492830, ECO:0000269|PubMed:12610213, ECO:0000269|PubMed:12787253, ECO:0000269|PubMed:14617069, ECO:0000269|PubMed:15202996, ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:15500463, ECO:0000269|PubMed:15723790, ECO:0000269|PubMed:16798887, ECO:0000269|PubMed:17122068, ECO:0000269|PubMed:17287247, ECO:0000269|PubMed:9212461}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc00312.1.g00330.1.am.mk |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By BRM, at the chromatin level, and conferring a very specific spatial expression pattern. Directly induced by ESR2 in response to cytokinins. Precise spatial regulation by post-transcriptional repression directed by the microRNA miR164. {ECO:0000269|PubMed:15202996, ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:15723790, ECO:0000269|PubMed:16854978, ECO:0000269|PubMed:17056621, ECO:0000269|PubMed:17287247}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AL606659 | 1e-115 | AL606659.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0070J16, complete sequence. | |||
GenBank | AL731630 | 1e-115 | AL731630.2 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0072M01, complete sequence. | |||
GenBank | AP014960 | 1e-115 | AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012612 | 1e-115 | CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025824637.1 | 1e-139 | protein CUP-SHAPED COTYLEDON 1-like | ||||
Swissprot | Q9FRV4 | 7e-57 | NAC54_ARATH; Protein CUP-SHAPED COTYLEDON 1 | ||||
TrEMBL | A0A2T7CXR4 | 1e-138 | A0A2T7CXR4_9POAL; Uncharacterized protein | ||||
TrEMBL | A0A3L6QAB8 | 1e-138 | A0A3L6QAB8_PANMI; NAC domain-containing protein 21/22-like | ||||
STRING | Pavir.Ga01251.1.p | 1e-138 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP697 | 38 | 166 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G28530.1 | 7e-73 | NAC domain containing protein 74 |