PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00312.1.g00010.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 437aa    MW: 48390.5 Da    PI: 9.765
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00312.1.g00010.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.11e-18180227148
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                   +g+WTt+Ed+ll++ v+q+G g+W+++ ++ g++R++k+c++rw +yl
  Zpz_sc00312.1.g00010.1.am.mk 180 KGPWTTQEDKLLIEHVRQHGEGRWNSVCKHTGLKRSGKSCRLRWVNYL 227
                                   79********************************************97 PP
2Myb_DNA-binding53.55.6e-17233277147
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                   rg+ T++E+ ++v++++++G++ W+tIar ++ gRt++++k++w+++
  Zpz_sc00312.1.g00010.1.am.mk 233 RGKITPQEERIIVQLHALWGNR-WSTIARSLP-GRTDNEIKNYWRTH 277
                                   8999******************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.015175227IPR017930Myb domain
SuperFamilySSF466897.11E-29178274IPR009057Homeodomain-like
SMARTSM007172.3E-16179229IPR001005SANT/Myb domain
PfamPF002491.3E-17180227IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.1E-23181234IPR009057Homeodomain-like
CDDcd001671.43E-12182227No hitNo description
PROSITE profilePS5129426.063228282IPR017930Myb domain
SMARTSM007172.8E-16232280IPR001005SANT/Myb domain
PfamPF002491.3E-14233277IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.0E-24235280IPR009057Homeodomain-like
CDDcd001672.84E-11237278No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 437 aa     Download sequence    Send to blast
LACGREKQGR EDLFNRVPVP AGRTFVALMM RGVAIRLDRQ RTYGLANRRG GRIGAGACAL  60
YARVGYVEAR VRDVPVLRSR SPSGNFMSRD ARTGTSGDSD HLTRLRTCPS DQDTRYRSRA  120
SMREPRCAAI TGLMARTTSS GDWNSPDKDV AFGERQGRIE LASMEGQLSW GRQEVDGWRK  180
GPWTTQEDKL LIEHVRQHGE GRWNSVCKHT GLKRSGKSCR LRWVNYLRPD LKRGKITPQE  240
ERIIVQLHAL WGNRWSTIAR SLPGRTDNEI KNYWRTHFKK GKPSKNIEIA RARFLKQRRE  300
MQCPQQQQQV QRVNKNEDTE LHATRTAGTV KVDADRGSAV VDNACPATTT AAAADQSGHQ  360
QAADLIIHDV IMDFMCPMSC SLLLHGAGAH QGAAGAGSCC GSTSEEYGSS EEDGATWGSL  420
WNLEDIVVDG GGGACSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C3e-2718028027126MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00312.1.g00010.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1096201e-123AK109620.1 Oryza sativa Japonica Group cDNA clone:002-138-A05, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025824833.11e-120transcription factor MYB8-like isoform X2
TrEMBLA0A3L6PVQ31e-123A0A3L6PVQ3_PANMI; Transcription repressor MYB6-like
STRINGSi010822m1e-116(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32433584
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13480.17e-62myb domain protein 79