PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00304.1.g00400.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family SBP
Protein Properties Length: 803aa    MW: 84872 Da    PI: 9.9923
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00304.1.g00400.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP128.32.9e-40288364177
                                   --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
                           SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                                   +CqvegC++ l+ akeyhrrhkvCe+hskap v+v g eqrfCqqCsrfh+lsefD++krsCrrrLa+hnerrrk++
  Zpz_sc00304.1.g00400.1.am.mk 288 RCQVEGCHVLLAGAKEYHRRHKVCEAHSKAPRVVVLGAEQRFCQQCSRFHALSEFDDAKRSCRRRLAGHNERRRKSS 364
                                   6**************************************************************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.102.4E-33282350IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.505286363IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.22E-37287366IPR004333Transcription factor, SBP-box
PfamPF031101.5E-31289362IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009911Biological Processpositive regulation of flower development
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0010229Biological Processinflorescence development
GO:0010321Biological Processregulation of vegetative phase change
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 803 aa     Download sequence    Send to blast
MGRAVADTDD WTGPYAPRQA RTLRPCTPGL LPRAGFPASG SSVPCVMTGE KRGAYSYTAR  60
SLKSVAQRRT ADTGPASIEL INDTAPCSCW PTFTCHLSRP LTYDPTCQYG CIAFPEPPAR  120
GAAPLRGASS PPCLPACLPA CFLYGEPRRV NLPPYLQQQH QTPPLFHLCL PRRRQEAMDG  180
NGGGSGTATP SWDLGTHWAP AGSSGYPQPF APRLGSGPSR DQQQHQQEQT WLNLGKQPCC  240
WAGAGGNQQG PQPSSWGHVH GNGGGTGGGS EAAAAAEGKR KEKAAAPRCQ VEGCHVLLAG  300
AKEYHRRHKV CEAHSKAPRV VVLGAEQRFC QQCSRFHALS EFDDAKRSCR RRLAGHNERR  360
RKSSASETMA RTVGHSHGLM PFGHGFFPSS PAGALSLLSS ARGGGAPWLI PATADISTRS  420
SAALDELIAE NRRALLAWQF FSEHSPAGRL VPSSSTGRVL PAGEVPAGWH TAQIQDHPGG  480
GGGRADDRYS FSEAPAGAGH TTLDLMQTPD TSAGAPFLKP VSERAGSART PRKDGGDAGC  540
TSVDAWASAE GAPDRVLQSR RRRGRRPSQT NSGERLITVP TCRSELWDDG ASYVSPRSAM  600
MAIMASPMRG SAIGFGKCGP YVVCKESHKR ETTYAAMAGP SAFRFVALIA VMSILSLLAF  660
PVSCHEDPAA EVTDESRQNT TTRRQAWAAA ARGYGGWSYG GATWYGSPYG AGGDGXXXXP  720
SCQSSRSSRS PCPATRIRPP RSRTSRGRTP PPGARRGPRR PEATAAGPTA ARRGTGAPTA  780
PAGTSRSRAV EAAARAPVEP GRG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A1e-282893621184squamosa promoter binding protein-like 4
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00290DAPTransfer from AT2G33810Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00304.1.g00400.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9646564e-94EU964656.1 Zea mays clone 280651 mRNA sequence.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP103033439
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33810.12e-34squamosa promoter binding protein-like 3