PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00300.1.g00220.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ARF
Protein Properties Length: 973aa    MW: 104985 Da    PI: 9.3979
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00300.1.g00220.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B340.35.8e-13128216185
                                   EEEE-..-HHHHTT-EE--HHH.HTT........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT CS
                            B3   1 ffkvltpsdvlksgrlvlpkkfaeeh........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkang 73 
                                   f+ +lt+sd+++s  l +p  +a+++        +++ e  +t++ +d +g  W+++++yrk + r+ lt+ W+ Fv  ++
  Zpz_sc00300.1.g00220.1.am.mk 128 FVLTLTQSDATSSV-LLVPHYCADTIfpplnyvhDLP-E--QTIVAKDVHGTFWKFRHNYRKIPPRHQLTTWWSTFVGKKR 204
                                   77889999999997.77799999888**999875544.3..48************************************** PP

                                   --TT-EEEEEE- CS
                            B3  74 LkegDfvvFkld 85 
                                   L  gD++vF + 
  Zpz_sc00300.1.g00220.1.am.mk 205 LVNGDSIVFLRA 216
                                   *********854 PP
2Auxin_resp98.49.9e-33241324183
                    Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWr 80 
                                   aa+ as +++Fev ++Pr   +eF+v+++ v++a++v++s+GmRfk+afet+dss++   +Gtv+gv+ +dpvrWp+S+Wr
  Zpz_sc00300.1.g00220.1.am.mk 241 AARLASAGQPFEVAFYPRLNMPEFCVRAKVVHEAMRVPWSPGMRFKIAFETNDSSKIIPvMGTVAGVQVADPVRWPQSPWR 321
                                   68899***************************************************9877********************* PP

                    Auxin_resp  81 sLk 83 
                                   +L+
  Zpz_sc00300.1.g00220.1.am.mk 322 LLQ 324
                                   *97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.8E-22122217IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.5E-18125217IPR015300DNA-binding pseudobarrel domain
CDDcd100171.69E-11128213No hitNo description
SMARTSM010191.2E-6128224IPR003340B3 DNA binding domain
PfamPF023621.1E-10128216IPR003340B3 DNA binding domain
PfamPF065075.6E-28241324IPR010525Auxin response factor
PROSITE profilePS5174512.122554630IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 973 aa     Download sequence    Send to blast
MASGSLPMIT SGDQQAPAAA GVERCVDRHL WLVCAGRMCT VPPVGEVVDY FPQGHAEHAA  60
GLSATVDLSA ARVPARVLCR VTAVRYMADP DTDEVFARIL LIPLPDGVSG AGLDDDVAVD  120
ESTKPDWFVL TLTQSDATSS VLLVPHYCAD TIFPPLNYVH DLPEQTIVAK DVHGTFWKFR  180
HNYRKIPPRH QLTTWWSTFV GKKRLVNGDS IVFLRAKRGF CGAGGAGNGG ATVRADDVIE  240
AARLASAGQP FEVAFYPRLN MPEFCVRAKV VHEAMRVPWS PGMRFKIAFE TNDSSKIIPV  300
MGTVAGVQVA DPVRWPQSPW RLLQVAWDKP ETLRNVERVS PWLVEVVSSM PGPLFMPPRK  360
KPRSVYPEFP FDGQLLNPAF PHNPLPHSQP PGPDFLHTYP SLFPFPGSSA LAAIQGARHA  420
PPVPSLLSDV LRNLQWRLPR PAPRRPTTIP TPARINSDLT TGANNKKPEK PAGIRLFGQT  480
ILTEEQMSRG GSSGATSPAA ARTSSLNWNA EKSANVSECL GSGVIQNSSR DKASSERQWS  540
GDGSSHLSDL GLGLGQCEVF MESDTVGRNL DLSPLTSFDE LYHRLSEMFG IESAALRSRV  600
IYRGATGAVK RVGDESFRSA RSLTILTDAG SDNLACLSLP DDERTQKITE THTENASRRV  660
SRSRARHPTD HHPALGPRGG VDRGEAGPGI RHKVTQKAKS SAERCTPQPT TIPRSGPRAP  720
WTEVRRVSAS GTSKALHPLT TTTPPHSGLG VPWTEVRWVP ASIGHKEMPK AKSSAERCTP  780
TDHYPALGPG GVVDGGEVGP GIGHKVMPKA KSSAERGTPL TTISRSGPRR CGRRHDVAGS  840
SSGGTSEFDL ERTSDPAQTG PAGWRCDRAT FTPTYQAFDP ALNPLIPRPA QIIVDLHALS  900
SCCPPQAAPP TPRRLLPGPS PRRLSCDCVP APLPSAPLRD PIGTGLDTQR HARLRQARLW  960
TEGIGAVARG PAH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A7e-542634951392Auxin response factor 5
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1357363PRKKPRS
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00300.1.g00220.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004953169.10.0auxin response factor 8
SwissprotQ6K2230.0ARFH_ORYSJ; Auxin response factor 8
TrEMBLA0A368PP630.0A0A368PP63_SETIT; Auxin response factor
TrEMBLK3YQG60.0K3YQG6_SETIT; Auxin response factor
STRINGSi016509m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51637152
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.11e-139auxin response factor 16