PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00300.1.g00210.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ARF
Protein Properties Length: 687aa    MW: 75319.5 Da    PI: 8.2918
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00300.1.g00210.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B353.25.3e-17131231199
                                   EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT-- CS
                            B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLk 75 
                                   f k+lt++d     ++ +p   ae++      +  k +++tl+ +d +g  W+++++yrk++ r+ l++GW+ Fv+ ++L 
  Zpz_sc00300.1.g00210.1.am.mk 131 FAKTLTQPDIAYP-WFLVPEYIAETIfpplnyD-AKLSEQTLVAKDVHGTAWKFQHSYRKRPLRHQLATGWSTFVRNKRLF 209
                                   5666655555554.5777888888888888752.3446679**************************************** PP

                                   TT-EEEEEE-SSSEE..EEEEE-S CS
                            B3  76 egDfvvFkldgrsefelvvkvfrk 99 
                                   +gD++vF   + +++ l+++++r+
  Zpz_sc00300.1.g00210.1.am.mk 210 TGDSIVFL--RGDGGDLHIGIRRA 231
                                   ********..3488999****996 PP
2Auxin_resp1059.1e-35253336183
                    Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWr 80 
                                   aa+ as++++Fev ++Pr   +eF+v+++ v +a++v++s+GmRfkmafet+dss++ + +Gtv+gv+ +dpvrWp+S Wr
  Zpz_sc00300.1.g00210.1.am.mk 253 AARLASSGQPFEVAFYPRLNMPEFCVRAKVVDEAMRVPWSPGMRFKMAFETDDSSQIIWfTGTVTGVKVADPVRWPQSLWR 333
                                   68899**************************************************************************** PP

                    Auxin_resp  81 sLk 83 
                                   +L+
  Zpz_sc00300.1.g00210.1.am.mk 334 LLE 336
                                   996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.0E-27125232IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.49E-20128232IPR015300DNA-binding pseudobarrel domain
CDDcd100179.07E-15130230No hitNo description
PROSITE profilePS5086310.856130232IPR003340B3 DNA binding domain
SMARTSM010196.3E-11131232IPR003340B3 DNA binding domain
PfamPF023623.9E-14132231IPR003340B3 DNA binding domain
PfamPF065077.4E-30253335IPR010525Auxin response factor
PROSITE profilePS5174513.486565641IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 687 aa     Download sequence    Send to blast
MASGSLPMIT AGDQQAPAAG AERCVDRNLW LACAGRMCTV PPVGDIVYYF PQGHAEHAAG  60
PAGLFSATVD LSAARVLVRV LCRVTAVRYM ADPETDEVFA RILLIPLPDG VMGTGLDDDA  120
AVDETKKPAS FAKTLTQPDI AYPWFLVPEY IAETIFPPLN YDAKLSEQTL VAKDVHGTAW  180
KFQHSYRKRP LRHQLATGWS TFVRNKRLFT GDSIVFLRGD GGDLHIGIRR AKSEFCGAGM  240
GRAKVMAEDL VEAARLASSG QPFEVAFYPR LNMPEFCVRA KVVDEAMRVP WSPGMRFKMA  300
FETDDSSQII WFTGTVTGVK VADPVRWPQS LWRLLEVTWD RPERLRNVKR VSPWLVEVVS  360
SMPDPSFLPP RKKPRSVHPE FPFDGQLLNS AFPPNPLPHN QPPRPYFLNT YPSLFPFPSG  420
SAPAAMQGDR HAQSVPSLPD YLTNLPSSLL YPGSHRPTTI PKPAIINTGL TIGVNNKKPE  480
KPAGIRLFGQ IIQTEEQMSL GSSSGATSPA ATTTSSLNWN AEKGANVSEC SGSGVIQNSS  540
RDKASSERQW SGDGSSHLSD LGLGPGQCEV FMESDTVGRN LDLSSLTSFD EFYHRLSEMF  600
GIESAALRSR VIYRDATGAV KHIGDGSFRS ARRLTILTDA GAGRENLADS DDCCLPACLR  660
RTANSKDNGD RERTRRVASR RLSRCFS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldy_A3e-622736121357Auxin response factor 1
4ldy_B3e-622736121357Auxin response factor 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1369375PRKKPRS
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00300.1.g00210.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004953169.10.0auxin response factor 8
SwissprotQ6K2230.0ARFH_ORYSJ; Auxin response factor 8
TrEMBLA0A368PP630.0A0A368PP63_SETIT; Auxin response factor
TrEMBLK3YQG60.0K3YQG6_SETIT; Auxin response factor
STRINGSi016509m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51637152
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.11e-141auxin response factor 16