PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc00289.1.g00380.1.sm.mkhc | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | WRKY | ||||||||
Protein Properties | Length: 220aa MW: 22864.3 Da PI: 4.3733 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 45.2 | 1.9e-14 | 11 | 49 | 22 | 59 |
EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 22 rsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +YYrC+s+ gCp++k+vers+ dp+ v++tY+ eHnh+ Zpz_sc00289.1.g00380.1.sm.mkhc 11 AAYYRCSSSkGCPARKQVERSRLDPDKVIVTYSFEHNHS 49 58*****998****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00774 | 9.1E-8 | 1 | 50 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 5.23E-11 | 11 | 49 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 6.8E-14 | 12 | 49 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 17.063 | 12 | 51 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.1E-12 | 12 | 48 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 220 aa Download sequence Send to blast |
MDSEWNDGAA AAYYRCSSSK GCPARKQVER SRLDPDKVIV TYSFEHNHSG AVPRVQNRQV 60 IPKPKAQTVP PEPAVESVSV GNMHDVAATA TAATCAGALA TRGNSGAGSV EVHDDFRWLY 120 DGVSVTSSTS PSDADAADDM LYGSMFFGAA VSAPAPLPDE FGDVGAWFGA GEAAEEDAMF 180 AGLGELPECA MVFRRHAGDG LAMAGAGMKV EQPGEGTAMT |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc00289.1.g00380.1.sm.mkhc |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK109770 | 3e-39 | AK109770.1 Oryza sativa Japonica Group cDNA clone:002-147-A06, full insert sequence. | |||
GenBank | AP003142 | 3e-39 | AP003142.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0435H01. | |||
GenBank | AP014957 | 3e-39 | AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence. | |||
GenBank | AY870603 | 3e-39 | AY870603.1 Oryza sativa (japonica cultivar-group) WRKY14 mRNA, complete cds. | |||
GenBank | CP012609 | 3e-39 | CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence. | |||
GenBank | CT831273 | 3e-39 | CT831273.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA107K10, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002458443.1 | 2e-72 | probable WRKY transcription factor 65 | ||||
TrEMBL | A0A3L6SUP7 | 3e-75 | A0A3L6SUP7_PANMI; Putative WRKY transcription factor 65 | ||||
STRING | Pavir.Ea02968.1.p | 3e-76 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP10947 | 33 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G58710.1 | 6e-15 | WRKY DNA-binding protein 69 |