PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00286.1.g00350.1.sm.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 395aa    MW: 42433 Da    PI: 4.2971
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00286.1.g00350.1.sm.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.69.1e-13147192555
                                   HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                           HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                   + e+ErrRR+++N ++ +Lr+l+P+      +K++ a+iL  A++YI  Lq
  Zpz_sc00286.1.g00350.1.sm.mk 147 NLEAERRRRKKLNGRLYKLRSLVPNI-----TKMDRASILGDAIDYIVGLQ 192
                                   5689*********************7.....7***************9887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.05E-14140203No hitNo description
SuperFamilySSF474596.28E-18140211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.317142191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.0E-10146192IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.6E-15148197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.0E-16149204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009555Biological Processpollen development
GO:0048658Biological Processanther wall tapetum development
GO:0005634Cellular Componentnucleus
GO:0000978Molecular FunctionRNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    Send to blast
MAEGEQMAEL VMAQCGVPER AAAAGTEGVQ AQPWAEPPGF AWDAVVPSLN LFDATGADPF  60
LATQQASSAV VDDEAVAGWQ YAAAAAAGSE PVSVAVQQEQ LHAGRAESGS DGSDLQGDRD  120
PELDDDDGEQ GQAADGKGGG RRQQSKNLEA ERRRRKKLNG RLYKLRSLVP NITKMDRASI  180
LGDAIDYIVG LQKEVKALQD ELEEPDVLVD HPPPASLVGL ENDDSSPRTG QHPLAGSKRS  240
WAAAVAEEEK GHDMEPQVEV RQVEANEFFL QLLCERKPGR FVRIMDAVRA LGLEVTNVNV  300
TSYNSLVLNV FRAIMRDNEV AVQADRVRDS LLQVTRESYG GVWSSAAAPP VGSGIDVKQL  360
DAGEIKLDGI DAQQASIAAE DDHYGGYNHL LQYLA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A2e-13140195257Transcription factor MYC2
5gnj_B2e-13140195257Transcription factor MYC2
5gnj_E2e-13140195257Transcription factor MYC2
5gnj_F2e-13140195257Transcription factor MYC2
5gnj_G2e-13140195257Transcription factor MYC2
5gnj_I2e-13140195257Transcription factor MYC2
5gnj_M2e-13140195257Transcription factor MYC2
5gnj_N2e-13140195257Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1150157ERRRRKKL
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the regulation of tapetum programmed cell death (PCD) and degradation during male reproductive development. Promotes tapetal PCD. Positively regulates the expression of two tapetum-specific genes, the cysteine protease CP1 and the lipid-transfer protein C6 (PubMed:17138695). Acts upstream from and interacts with EAT1/DTD in the regulation of tapetal PCD (PubMed:23385589). Regulates the expression of genes related to aliphatic metabolism during pollen development. May play regulatory role in the lipidic metabolism involved in the formation of pollen wall (PubMed:19825565). {ECO:0000269|PubMed:17138695, ECO:0000269|PubMed:19825565, ECO:0000269|PubMed:23385589}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00286.1.g00350.1.sm.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025825508.11e-162transcription factor TDR-like
RefseqXP_025825517.11e-162transcription factor TDR-like
RefseqXP_025825524.11e-162transcription factor TDR-like
RefseqXP_025825535.11e-162transcription factor TDR-like
RefseqXP_025825544.11e-162transcription factor TDR-like
RefseqXP_025825551.11e-162transcription factor TDR-like
RefseqXP_025825560.11e-162transcription factor TDR-like
SwissprotQ6YUS31e-112TDR_ORYSJ; Transcription factor TDR
TrEMBLA0A2S3GKL91e-161A0A2S3GKL9_9POAL; Uncharacterized protein
TrEMBLA0A3L6QCU41e-161A0A3L6QCU4_PANMI; Transcription factor ABORTED MICROSPORES-like isoform X2
STRINGSi006500m1e-149(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP55303449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16910.12e-54bHLH family protein
Publications ? help Back to Top
  1. Endo M, et al.
    High temperatures cause male sterility in rice plants with transcriptional alterations during pollen development.
    Plant Cell Physiol., 2009. 50(11): p. 1911-22
    [PMID:19808807]
  2. Xu J,Wu M,He C
    [Identification and functional analysis of Tdrxoo, the member of TonB-dependent-receptor family proteins in Xanthomonas oryzae pv. oryzae].
    Wei Sheng Wu Xue Bao, 2010. 50(2): p. 155-61
    [PMID:20387456]
  3. Liu Z,Bao W,Liang W,Yin J,Zhang D
    Identification of gamyb-4 and analysis of the regulatory role of GAMYB in rice anther development.
    J Integr Plant Biol, 2010. 52(7): p. 670-8
    [PMID:20590996]
  4. Zhang D, et al.
    OsC6, encoding a lipid transfer protein, is required for postmeiotic anther development in rice.
    Plant Physiol., 2010. 154(1): p. 149-62
    [PMID:20610705]
  5. Senapati PK,Behera S
    Experimental investigation on an entrained flow type biomass gasification system using coconut coir dust as powdery biomass feedstock.
    Bioresour. Technol., 2012. 117: p. 99-106
    [PMID:22613886]
  6. Zhang SR,Dong DM,Zheng WG,Zhao XD,Wang JH
    [Laser-induced fluorescence spectroscopy characterization of farmland soil moisture content].
    Guang Pu Xue Yu Guang Pu Fen Xi, 2012. 32(10): p. 2623-7
    [PMID:23285852]
  7. Li L, et al.
    An anther development F-box (ADF) protein regulated by tapetum degeneration retardation (TDR) controls rice anther development.
    Planta, 2015. 241(1): p. 157-66
    [PMID:25236969]
  8. Yi J, et al.
    Defective Tapetum Cell Death 1 (DTC1) Regulates ROS Levels by Binding to Metallothionein during Tapetum Degeneration.
    Plant Physiol., 2016. 170(3): p. 1611-23
    [PMID:26697896]