PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00281.1.g00250.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GATA
Protein Properties Length: 364aa    MW: 38800.4 Da    PI: 7.2685
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00281.1.g00250.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA60.42.3e-19284318135
                          GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                                   Cs+Cg+ kTp+WR gp+g ktLCnaCG+++++ +l
  Zpz_sc00281.1.g00250.1.am.mk 284 CSHCGVQKTPQWRAGPEGAKTLCNACGVRFKSGRL 318
                                   *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004015.8E-18278332IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.163278314IPR000679Zinc finger, GATA-type
SuperFamilySSF577167.13E-14281341No hitNo description
Gene3DG3DSA:3.30.50.102.3E-15282316IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.04E-15283340No hitNo description
PROSITE patternPS003440284309IPR000679Zinc finger, GATA-type
PfamPF003202.6E-17284318IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MDALKSSAFS PEETAEDAAA ANAELVEREG FSIEDLLDME VFGEPDMDSA DQEDAPPPPA  60
TTAEETDEKS SSGKSQPSSI VTYELPPPPP EMVDLPAHDV EEELEWVSRV IDDSLSELPP  120
PPQPLAMAAA QAARSPLAHH RLPHDGPYRA VPPAPGPLRT LSTDVLVPVK AKRSKRSPSS  180
AWYVSGASLF SDSPSSSSTA TTSSSSSSSA SFPSFLLDSP PFSSPDFEGY PRFLQPRRKK  240
SKHSKGGKQK PNKRGRKPKH APQLTGAAAA AAAASQVTQG DRRCSHCGVQ KTPQWRAGPE  300
GAKTLCNACG VRFKSGRLLP EYRPACSPTF VSSIHSNSHR KVLEMRRKKE AGLVATAAPA  360
VASF
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00281.1.g00250.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9471369e-87EU947136.1 Zea mays clone 328769 mRNA sequence.
GenBankEU9554329e-87EU955432.1 Zea mays clone 1531924 hypothetical protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001151060.11e-131uncharacterized protein LOC100284693
TrEMBLB6TWI71e-130B6TWI7_MAIZE; GATA zinc finger family protein
STRINGGRMZM2G404973_P031e-127(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141733108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66320.21e-39GATA transcription factor 5