PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc00281.1.g00120.1.sm.mk

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

NAC

Protein Properties

Length: 356aa MW: 40515.3 Da PI: 6.4481

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc00281.1.g00120.1.sm.mk	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	109.3	4.4e-34	67	159	35	129
NAM 35 kevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapk 115 k++++y++e ++ + +++++ewyfFs++dkky+tg+r+nrat++g+Wkatg+dk++++ k+ lvg++ktLvfy+grap+ Zpz_sc00281.1.g00120.1.sm.mk 67 KQAELYYAEAEKCK-IGTEDQNEWYFFSHKDKKYPTGTRTNRATTAGFWKATGRDKPIYV-KNCLVGMRKTLVFYEGRAPN 145 56677777777776.2334677************************************.999************* PP NAM 116 gektdWvmheyrle 129 g+k+dW+mheyrle Zpz_sc00281.1.g00120.1.sm.mk 146 GQKSDWIMHEYRLE 159 **********85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	36.053	25	179	IPR003441	NAC domain
Pfam	PF02365	7.6E-16	79	158	IPR003441	NAC domain
SuperFamily	SSF101941	9.02E-38	84	179	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 356 aa Download sequence Send to blast
MFNFSLHLLG HCLQRYSVVR AEAEAEFPFR VRESNSVLEE TARVQGLAEI GVLSGGARRP 60 GADARSKQAE LYYAEAEKCK IGTEDQNEWY FFSHKDKKYP TGTRTNRATT AGFWKATGRD 120 KPIYVKNCLV GMRKTLVFYE GRAPNGQKSD WIMHEYRLET SENGMPHEEG WVVCRVFRKR 180 LATVQRMPSD APYWFNDHGG FMAPEPSSHH QQNAMVYQRQ PSYPCKVELE YHHLLPQEHF 240 LQLPQLESPK LPDLVGSVAT LQPCSLTQEH VASRYMGQEL QAEQFYLTAG HASGSDWRAL 300 DKFVASQLIS NEDANSKEPG SYSNQVQVFN QVEEKEEALD YVSTSASCGG ENDLWK

Sequence ? help Back to Top

Protein Sequence Length: 356 aa Download sequence Send to blast

MFNFSLHLLG HCLQRYSVVR AEAEAEFPFR VRESNSVLEE TARVQGLAEI GVLSGGARRP  60
GADARSKQAE LYYAEAEKCK IGTEDQNEWY FFSHKDKKYP TGTRTNRATT AGFWKATGRD  120
KPIYVKNCLV GMRKTLVFYE GRAPNGQKSD WIMHEYRLET SENGMPHEEG WVVCRVFRKR  180
LATVQRMPSD APYWFNDHGG FMAPEPSSHH QQNAMVYQRQ PSYPCKVELE YHHLLPQEHF  240
LQLPQLESPK LPDLVGSVAT LQPCSLTQEH VASRYMGQEL QAEQFYLTAG HASGSDWRAL  300
DKFVASQLIS NEDANSKEPG SYSNQVQVFN QVEEKEEALD YVSTSASCGG ENDLWK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	8e-30	86	180	70	166	NO APICAL MERISTEM PROTEIN
1ut4_B	8e-30	86	180	70	166	NO APICAL MERISTEM PROTEIN
1ut7_A	8e-30	86	180	70	166	NO APICAL MERISTEM PROTEIN
1ut7_B	8e-30	86	180	70	166	NO APICAL MERISTEM PROTEIN
4dul_A	8e-30	86	180	70	166	NAC domain-containing protein 19
4dul_B	8e-30	86	180	70	166	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:16103214, PubMed:25148240). {ECO:0000250\|UniProtKB:Q9LVA1, ECO:0000269\|PubMed:16103214, ECO:0000269\|PubMed:25148240}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc00281.1.g00120.1.sm.mk

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002448236.1	1e-166	NAC domain-containing protein 7
Swissprot	Q9FWX2	9e-86	NAC7_ARATH; NAC domain-containing protein 7
TrEMBL	C5YCY6	1e-165	C5YCY6_SORBI; Uncharacterized protein
STRING	Sb06g023780.1	1e-166	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2370	38	92

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G12260.1	5e-78	NAC 007

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Heyndrickx KS,Vandepoele K Systematic identification of functional plant modules through the integration of complementary data sources. Plant Physiol., 2012. 159(3): p. 884-901 [PMID:22589469]