PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00278.1.g00180.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GRAS
Protein Properties Length: 608aa    MW: 64858.2 Da    PI: 6.8991
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00278.1.g00180.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS267.54.3e-822466073374
                          GRAS   3 elLlecAeavssgdlelaqalLarlsel...aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaa 80 
                                    +L e+Ae  ++gd   a+a+Larl+++   a  +g+p++R a+yf+eAL+  l+    ++    +p++ ++ ++  ++ a
  Zpz_sc00278.1.g00180.1.am.mk 246 GQLAEAAELAEAGDVLGARAILARLNNRfpaAPTAGTPLHRCAFYFKEALRVALST---TTG-D-APTAPTPVDVLLKIGA 321
                                   689************************999555566******************99...222.2.45555567899***** PP

                          GRAS  81 lklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg.....ske 156
                                   +k+fsev P+++f+h+t+ qa+l+++ g+ ++H++Df+i+ G QW++L+q+La+R+ +  sl++T+++s  s+        
  Zpz_sc00278.1.g00180.1.am.mk 322 YKAFSEVAPVVQFAHFTCVQAVLDELGGAGCIHVLDFEIGVGDQWASLMQELAQRR-PGTSLKVTALVSTPSSsphhrLPL 401
                                   ******************************************************95.558******988555567766678 PP

                          GRAS 157 eleetgerLakfAeelgvpfefnvlvakrledlel.eeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsP 236
                                   el+ ++e+L++fA+  +vpf+f v+   +le+ ++ e L++  g+a+aV+l +          +++s    +L+lv++l +
  Zpz_sc00278.1.g00180.1.am.mk 402 ELQLVQENLSSFAADARVPFQFAVF---SLESTDPtEILAMAAGDAIAVHLPVGCSVHT---PAMPS----ILHLVRRLGA 472
                                   99**********************8...566665515578888*********9776654...56666....********** PP

                          GRAS 237 kvvvvveqeadh.nsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWr 316
                                   k+vv v++ +d+ ++ +F++++++a++ ++ l++sl+a     s    k+Er l++++i+++v  + +  +    +   Wr
  Zpz_sc00278.1.g00180.1.am.mk 473 KLVVTVDRSCDRrSELPFAAHLFQAFQSCVFLLESLDAV---GSTGSDKIERLLIQPRIESCVVSKYRGAI-AGDRTPPWR 549
                                   ************8999********************998...689999********************955.556699*** PP

                          GRAS 317 erleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                                   + l +aGF pv+ s++a+ qa++ll+kv+++g+rve++ gsl+l W++ +Lvsv+ Wr
  Zpz_sc00278.1.g00180.1.am.mk 550 ALLASAGFVPVQASSFAEVQADSLLKKVPVRGFRVEKRAGSLLLHWQRGELVSVTTWR 607
                                   *********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098537.551218587IPR005202Transcription factor GRAS
PfamPF035141.5E-79246607IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 608 aa     Download sequence    Send to blast
MLRFLDSPSP RPLVGKGCCC AVVALPAVCL TQLVSCLPPS AAHTHDTPSR LSPRLYYYSY  60
TGGVGQADSI YEKEGWNQAQ SKGSVLDHRP SAKPLPPRSA STLSSPLRDV AALAGATNAK  120
SISPPPPAWP PGDDDGAPGP GGKEDTSWIH HLPPLDHMSS QQQDNTFLHW IIGGDVSTAQ  180
AMPSGVTEHH PVLADSVPPH QPLPFPPPQP LVFHPSMDIA VTRHQPTAAV LKPTKPEEDD  240
TAAAVGQLAE AAELAEAGDV LGARAILARL NNRFPAAPTA GTPLHRCAFY FKEALRVALS  300
TTTGDAPTAP TPVDVLLKIG AYKAFSEVAP VVQFAHFTCV QAVLDELGGA GCIHVLDFEI  360
GVGDQWASLM QELAQRRPGT SLKVTALVST PSSSPHHRLP LELQLVQENL SSFAADARVP  420
FQFAVFSLES TDPTEILAMA AGDAIAVHLP VGCSVHTPAM PSILHLVRRL GAKLVVTVDR  480
SCDRRSELPF AAHLFQAFQS CVFLLESLDA VGSTGSDKIE RLLIQPRIES CVVSKYRGAI  540
AGDRTPPWRA LLASAGFVPV QASSFAEVQA DSLLKKVPVR GFRVEKRAGS LLLHWQRGEL  600
VSVTTWRC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-2327660732375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00278.1.g00180.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002468689.20.0scarecrow-like protein 6
TrEMBLA0A0A9H9V70.0A0A0A9H9V7_ARUDO; Uncharacterized protein
STRINGBRADI1G78230.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP67232954
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.15e-73GRAS family protein