PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc00276.1.g00030.1.am.mk

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 1112aa MW: 120580 Da PI: 10.4944

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc00276.1.g00030.1.am.mk	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	11	0.00079	741	762	34	55
TTS-STCHHHHHHHHHHHHHHH CS HLH 34 pskKlsKaeiLekAveYIksLq 55 +++ +Ka++L ++++Y+k+Lq Zpz_sc00276.1.g00030.1.am.mk 741 QGESTDKASMLDEVIDYLKQLQ 762 56669****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	8.96E-4	737	766	No hit	No description
SuperFamily	SSF47459	1.31E-5	742	785	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.7E-4	744	770	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 1112 aa Download sequence Send to blast
MENGSARYMA RRIILTDSHL ASRRPPPLPR PRRIGQLLDG QRITSSSSPA WFRPWLTSES 60 GKNDEVESRF SGSRKGCAHP ARANWRKTTI PVSSAPKLEP GRGMDDLGCG SFISARRSFE 120 KWWLAQRTAV AQLRRPVVEV PISGSHLADD GEIFKRGFKR DACRGWLSMV MMVRNLAMRM 180 CLVCFAGEMF YVCVYERWLG TKLTCVCEME FQQPGGEHVL EVGGLCGSLV AGSSGSTRAR 240 PASRTRGRVF LRSECRRAEA WEFVHAWLAR DVGGLASGAV WPRAKDEVRL EFLDLLRLRY 300 MWHVEGLSTD RAAWQAAKFW ELYQGPGATN QRPAKMNRPK SPPRHYSMAI DLTDTGRENR 360 STPARRALKL LRPCKNPQSC GSRGGYVPAS ASQARGPSLP RLPPCRHSRG PPPPPIRTPA 420 SAIERAISNR SMVISRAHPS LLKCPRPPRV PRARNGTSTR ALLVHTLACR ARPSLPAHAG 480 VVPPSATSHV IGRGGGVEMN QCVPSWDLDD PAAGSVPINK VSAAAGAYHR AAVAGAGDSL 540 SPLVVPMSDQ YYEGSISSHG LLNRPTPKYP PAAPSHQLQA IGGGGDGGSG DHETLEAVVG 600 EAATRSHFPQ PSFPATPWLG VGVPLHADAL VPCARNEQAA GEETPRKRAR VVGDGGLVCT 660 SQGSVASGRR GESAMHALDA ACGTDVCGFT TTTNNSTSLD REENKGSPDT ENTSIGGGAK 720 TKGQDQPEDE NSTKAGPKLK QGESTDKASM LDEVIDYLKQ LQAQVQVMSR MSSMMMPMAM 780 PQLQMSVMAQ MAQMAQMAQM AQGMMNMGSL AQPGYVPPPF VPLPWDAGGD RAARPGGSAM 840 ADAFATFLAC QQAQQNGQVR VQAQMIIHIR VFEFMCDARN CTQIKDGAQA LLNQCLCSLN 900 RLGGSRPLGR QSRGRNAHSS AAAPIRHPDS GGDHARDDDE SSEPARIKSR ASWSSRRDTW 960 PAAIGDLLTP AGIGAMQPHM PRNAGRQLDP RIKRREARQR RGQADTGGRK RRVGKKPDVM 1020 VSANKPLPEE MGRAFGRTPL SKDAGLQLCN ALFDWRLSPG RGRLASERRR HSEKLAVSMR 1080 AGMNRVQLAM PFPCSAEMLD QPSPIHELKA VI

Sequence ? help Back to Top

Protein Sequence Length: 1112 aa Download sequence Send to blast

MENGSARYMA RRIILTDSHL ASRRPPPLPR PRRIGQLLDG QRITSSSSPA WFRPWLTSES  60
GKNDEVESRF SGSRKGCAHP ARANWRKTTI PVSSAPKLEP GRGMDDLGCG SFISARRSFE  120
KWWLAQRTAV AQLRRPVVEV PISGSHLADD GEIFKRGFKR DACRGWLSMV MMVRNLAMRM  180
CLVCFAGEMF YVCVYERWLG TKLTCVCEME FQQPGGEHVL EVGGLCGSLV AGSSGSTRAR  240
PASRTRGRVF LRSECRRAEA WEFVHAWLAR DVGGLASGAV WPRAKDEVRL EFLDLLRLRY  300
MWHVEGLSTD RAAWQAAKFW ELYQGPGATN QRPAKMNRPK SPPRHYSMAI DLTDTGRENR  360
STPARRALKL LRPCKNPQSC GSRGGYVPAS ASQARGPSLP RLPPCRHSRG PPPPPIRTPA  420
SAIERAISNR SMVISRAHPS LLKCPRPPRV PRARNGTSTR ALLVHTLACR ARPSLPAHAG  480
VVPPSATSHV IGRGGGVEMN QCVPSWDLDD PAAGSVPINK VSAAAGAYHR AAVAGAGDSL  540
SPLVVPMSDQ YYEGSISSHG LLNRPTPKYP PAAPSHQLQA IGGGGDGGSG DHETLEAVVG  600
EAATRSHFPQ PSFPATPWLG VGVPLHADAL VPCARNEQAA GEETPRKRAR VVGDGGLVCT  660
SQGSVASGRR GESAMHALDA ACGTDVCGFT TTTNNSTSLD REENKGSPDT ENTSIGGGAK  720
TKGQDQPEDE NSTKAGPKLK QGESTDKASM LDEVIDYLKQ LQAQVQVMSR MSSMMMPMAM  780
PQLQMSVMAQ MAQMAQMAQM AQGMMNMGSL AQPGYVPPPF VPLPWDAGGD RAARPGGSAM  840
ADAFATFLAC QQAQQNGQVR VQAQMIIHIR VFEFMCDARN CTQIKDGAQA LLNQCLCSLN  900
RLGGSRPLGR QSRGRNAHSS AAAPIRHPDS GGDHARDDDE SSEPARIKSR ASWSSRRDTW  960
PAAIGDLLTP AGIGAMQPHM PRNAGRQLDP RIKRREARQR RGQADTGGRK RRVGKKPDVM  1020
VSANKPLPEE MGRAFGRTPL SKDAGLQLCN ALFDWRLSPG RGRLASERRR HSEKLAVSMR  1080
AGMNRVQLAM PFPCSAEMLD QPSPIHELKA VI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	992	1011	KRREARQRRGQADTGGRKRR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc00276.1.g00030.1.am.mk

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK361420	8e-65	AK361420.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1140E09.
GenBank	AK367814	8e-65	AK367814.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2062O04.

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7474	31	40

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00050.1	5e-06	bHLH family protein