PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc00274.1.g00350.1.am.mk

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

M-type_MADS

Protein Properties

Length: 402aa MW: 42158.7 Da PI: 4.6374

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc00274.1.g00350.1.am.mk	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	53.2	3.8e-17	9	50	1	42
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 k+ienk++rq + kRr+++l KA+EL +LCd+ vav+i+ + Zpz_sc00274.1.g00350.1.am.mk 9 KFIENKRRRQSALRKRRATLLEKAKELATLCDVAVAVVIYCQ 50 79*************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	16.245	1	48	IPR002100	Transcription factor, MADS-box
SMART	SM00432	2.9E-15	1	60	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.7E-5	3	23	IPR002100	Transcription factor, MADS-box
CDD	cd00266	2.11E-19	6	83	No hit	No description
SuperFamily	SSF55455	7.98E-17	6	85	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.9E-14	10	49	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.7E-5	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.7E-5	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 402 aa Download sequence Send to blast
MAPSPLKIKF IENKRRRQSA LRKRRATLLE KAKELATLCD VAVAVVIYCQ GEAEAVTWPS 60 AAETKTILER FVALPDVAKA NMNIEAFMQS RVEKVTKVLD NLKQGNCTQQ TYLVLNAIRN 120 GDRLNLDDLP PELAAAVKEA YAARMNLVAR HIRNPVAQAT AAAPLPPADA ATLAPAAPQL 180 PFMLPSLPET GYEAHRNVVA SYLNSLAAQA TSAAPPPPAD AAVLAQAPQE PFVLPPLSES 240 AYVAEMNLVA SYINNLAAQA TSAAPPPPAD AALVPGPQEP LVPPPLTMAP MAVTDEHAPL 300 VAPPLALEAV VADTQAPLVA PPLALEAVVA DALAPLVAPP LAATPPVVPD TPAPSLQMDL 360 DGKPLPDSFL AEMVAAIMDD GSGSNVAPTD DDVQRIRKQH GL

Sequence ? help Back to Top

Protein Sequence Length: 402 aa Download sequence Send to blast

MAPSPLKIKF IENKRRRQSA LRKRRATLLE KAKELATLCD VAVAVVIYCQ GEAEAVTWPS  60
AAETKTILER FVALPDVAKA NMNIEAFMQS RVEKVTKVLD NLKQGNCTQQ TYLVLNAIRN  120
GDRLNLDDLP PELAAAVKEA YAARMNLVAR HIRNPVAQAT AAAPLPPADA ATLAPAAPQL  180
PFMLPSLPET GYEAHRNVVA SYLNSLAAQA TSAAPPPPAD AAVLAQAPQE PFVLPPLSES  240
AYVAEMNLVA SYINNLAAQA TSAAPPPPAD AALVPGPQEP LVPPPLTMAP MAVTDEHAPL  300
VAPPLALEAV VADTQAPLVA PPLALEAVVA DALAPLVAPP LAATPPVVPD TPAPSLQMDL  360
DGKPLPDSFL AEMVAAIMDD GSGSNVAPTD DDVQRIRKQH GL

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc00274.1.g00350.1.am.mk

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP28156	3	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40210.1	1e-09	AGAMOUS-like 48