PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00269.1.g00230.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family M-type_MADS
Protein Properties Length: 386aa    MW: 42554.9 Da    PI: 11.5437
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00269.1.g00230.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF54.12e-17328370244
                                   ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
                        SRF-TF   2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44 
                                   rien++ rq  + kRr+++l KA+EL vLCd+ vav+++s+  
  Zpz_sc00269.1.g00230.1.am.mk 328 RIENERSRQAALRKRRATLLQKAKELAVLCDVAVAVVVYSNGE 370
                                   9***************************************865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500668.802843IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.14E-5951IPR002100Transcription factor, MADS-box
PfamPF003191.7E-51043IPR002100Transcription factor, MADS-box
PROSITE profilePS5006620.296319368IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.27E-19319379IPR002100Transcription factor, MADS-box
SMARTSM004322.2E-23319378IPR002100Transcription factor, MADS-box
CDDcd001205.04E-22320378No hitNo description
PRINTSPR004041.4E-13321341IPR002100Transcription factor, MADS-box
PfamPF003191.1E-16328371IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-13341356IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-13356377IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MGQVKLGRVI SRKTRQASTF QRRRADLFME ASSLSNLCHV PVAPAIWPPA ESASILLQRY  60
KIFLLRQRTE KLRRLLRVVK LANRAHEVSL VLADLLAGHH QVLDGVPVDL AVDVRAVLRL  120
RLKVVSGAIG SSSATVDVAD DGEIRRGSGL LEKAAAVMAE ESGGAQPTDA ELERFLGELL  180
LLKWPVVLTV LTPNLANLDR FRPTLPPRCR RSRAPERQVP AGRSLHRHGL KPKNKARTRR  240
PLLISIKGAP FSIDLLKPSK KKKNNLQHGQ KVGYCRGDAV PDTFPSGLAS PAIKHGLLLR  300
PPPTNHQNLL DRVPKVPAMT RGKVKIQRIE NERSRQAALR KRRATLLQKA KELAVLCDVA  360
VAVVVYSNGE PVPETFPSAA QTKEIL
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00269.1.g00230.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2444045
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54340.12e-11MIKC_MADS family protein