PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc00266.1.g00320.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | NAC | ||||||||
Protein Properties | Length: 491aa MW: 54619.4 Da PI: 8.0084 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 162.3 | 1.8e-50 | 229 | 357 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksg 81 lppGfrF P+deelv++yL kkv+++++ ++ evd++ ePw+Lp +k + +ewyfFs rd+kyatg+r+nratk+g Zpz_sc00266.1.g00320.1.am.mk 229 LPPGFRFYPSDEELVCHYLYKKVANERIAQ-GTLVEVDLHAREPWELPDVAKLTASEWYFFSFRDRKYATGSRTNRATKTG 308 79*************************998.88***************77777889************************* PP NAM 82 yWkatgkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128 yWkatgkd+ev s ++++vg++ktLvfy+grap+g+k+ Wvmhe+rl Zpz_sc00266.1.g00320.1.am.mk 309 YWKATGKDREVRSPasTRAVVGMRKTLVFYQGRAPNGVKSGWVMHEFRL 357 ************99777788***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 5.23E-60 | 221 | 376 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 58.558 | 229 | 376 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.7E-27 | 230 | 357 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 491 aa Download sequence Send to blast |
MDRRGSWLAR VARAIEACKA RIRVAIPQDR LLCRRATRLR LLRVLGDRAL LLVDHNDTSI 60 DDELSIGRVP AGCSRITDRS EPFDASWAFP AAHVRGLAAT SRYSTHTRAS GKLALDHVWS 120 RSIDAAWLGN LPGRVWLCEA DDACCRRHCS CTTLARFQYS ARPAVCATEM AARYWNLSTW 180 LRSVSVVASA DGDLTAARHV SSRPADQLDT VATPRRQDEV LHSMIESTLP PGFRFYPSDE 240 ELVCHYLYKK VANERIAQGT LVEVDLHARE PWELPDVAKL TASEWYFFSF RDRKYATGSR 300 TNRATKTGYW KATGKDREVR SPASTRAVVG MRKTLVFYQG RAPNGVKSGW VMHEFRLDAP 360 HSQPREDWVL CRVFQKTKGD GDGQVDSACG ASSPTLTGSS HAMPEQEHHH AAPCGYYGPG 420 FLPQQEVAVL PYYDGPVVDR HGFPQDDAGG ALPGLEFGAR GVAGDEYGFG WFDMAGFDEM 480 TTNHGFPQGW N |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 6e-47 | 224 | 376 | 12 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 6e-47 | 224 | 376 | 12 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 6e-47 | 224 | 376 | 12 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 6e-47 | 224 | 376 | 12 | 165 | NO APICAL MERISTEM PROTEIN |
3swm_A | 7e-47 | 224 | 376 | 15 | 168 | NAC domain-containing protein 19 |
3swm_B | 7e-47 | 224 | 376 | 15 | 168 | NAC domain-containing protein 19 |
3swm_C | 7e-47 | 224 | 376 | 15 | 168 | NAC domain-containing protein 19 |
3swm_D | 7e-47 | 224 | 376 | 15 | 168 | NAC domain-containing protein 19 |
3swp_A | 7e-47 | 224 | 376 | 15 | 168 | NAC domain-containing protein 19 |
3swp_B | 7e-47 | 224 | 376 | 15 | 168 | NAC domain-containing protein 19 |
3swp_C | 7e-47 | 224 | 376 | 15 | 168 | NAC domain-containing protein 19 |
3swp_D | 7e-47 | 224 | 376 | 15 | 168 | NAC domain-containing protein 19 |
4dul_A | 6e-47 | 224 | 376 | 12 | 165 | NAC domain-containing protein 19 |
4dul_B | 6e-47 | 224 | 376 | 12 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc00266.1.g00320.1.am.mk |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK062955 | 1e-169 | AK062955.1 Oryza sativa Japonica Group cDNA clone:001-109-C12, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002452475.1 | 1e-119 | NAC domain-containing protein 100 | ||||
TrEMBL | C5XXS9 | 1e-118 | C5XXS9_SORBI; Uncharacterized protein | ||||
STRING | Sb04g026440.1 | 1e-119 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP697 | 38 | 166 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G28530.1 | 2e-71 | NAC domain containing protein 74 |