PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00244.1.g00290.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 376aa    MW: 40859.4 Da    PI: 4.9587
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00244.1.g00290.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.23.1e-16202250355
                           AP2   3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                   ++GVr++  +g+WvAeIr+p   + r +r++lg+f+ a +Aa a+++a+ +++g
  Zpz_sc00244.1.g00290.1.am.mk 202 FSGVRQRQ-WGKWVAEIREP---N-RgRRYWLGTFDNAVDAALAYDRAAVCIYG 250
                                   78***999.**********8...3.35**********************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.31E-25201260No hitNo description
SMARTSM003801.3E-28201266IPR001471AP2/ERF domain
PROSITE profilePS5103220.363201260IPR001471AP2/ERF domain
SuperFamilySSF541712.68E-18202261IPR016177DNA-binding domain
PRINTSPR003676.2E-7202213IPR001471AP2/ERF domain
PfamPF008477.8E-10202250IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.1E-26202261IPR001471AP2/ERF domain
PRINTSPR003676.2E-7224240IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MKASDLDNTT NRERTDRPLF PCWRESIGGK LRSSQADASD PIAVRGWPGS TPAVGAACYG  60
APRLPRTLVL PSLFQEDSSR SDDSVSLAVF VRFAKQTDLL PQAPIASQGG PSEKLHYMPG  120
TERRFQHPPP APSTLAVPTR DGDGDEDRAA EREESRSTAG FREWEGDAMG VVGVGLQSKE  180
MERAPRPARQ GKGGPDNMRY NFSGVRQRQW GKWVAEIREP NRGRRYWLGT FDNAVDAALA  240
YDRAAVCIYG AHARERLNFP AAAAAAVTSA ATPQCQPTFG SPAAATDAFQ ERGVKPVVSG  300
TQGGGLAISS TQQQRGSSWT PAAAKPDEEA WDDCFDDIAM YMDLDAVSDV VPCYRGMKKE  360
DCQFDELDVS LWPLDG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-13201260563ATERF1
3gcc_A2e-13201260563ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00244.1.g00290.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004961770.15e-55dehydration-responsive element-binding protein 2D
TrEMBLA0A1E5VIG79e-59A0A1E5VIG7_9POAL; Uncharacterized protein
STRINGSi024427m3e-53(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141022226
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75490.19e-20ERF family protein