PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00243.1.g00520.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 511aa    MW: 54573.6 Da    PI: 9.7388
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00243.1.g00520.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding60.63.5e-19217262147
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                   rg+W++eEd+ l ++v+++G ++W+tI r+++ gR++k+c++rw + 
  Zpz_sc00243.1.g00520.1.am.mk 217 RGPWSPEEDDMLRRLVERHGARNWTTIGREIP-GRSGKSCRLRWCNQ 262
                                   89******************************.***********985 PP
2Myb_DNA-binding54.23.3e-17269311145
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                                   r ++T+eEd  +v+a+++lG++ W++Iar ++ gRt++ +k++w+
  Zpz_sc00243.1.g00520.1.am.mk 269 RRPFTAEEDATIVRAHARLGNR-WAAIARLLP-GRTDNAVKNHWN 311
                                   679*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.13E-30216310IPR009057Homeodomain-like
SMARTSM007178.2E-17216265IPR001005SANT/Myb domain
PROSITE profilePS5129423.865216267IPR017930Myb domain
PfamPF002494.5E-18217262IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.2E-25218270IPR009057Homeodomain-like
CDDcd001672.75E-15219261No hitNo description
SMARTSM007171.1E-15268316IPR001005SANT/Myb domain
PfamPF002491.2E-14269311IPR001005SANT/Myb domain
PROSITE profilePS5129419.978269318IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.7E-23271318IPR009057Homeodomain-like
CDDcd001679.99E-12271311No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0010200Biological Processresponse to chitin
GO:0046686Biological Processresponse to cadmium ion
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 511 aa     Download sequence    Send to blast
MGSSKATTPN RGSGEKDADV PGCTPVRCGR RTPRGEAVDG RDELTTGLGA PHVRASGASR  60
RNGSSPAMLE DGMATDGWIS TARPAEVVTA ASSYIIRRET GRRRFGHGHV PPSPRRGVAF  120
VDGEFPLHST SALLSACRLG RISVRAQDDG GSCSSFVRSR CCELRVPSYV APGFATRALG  180
DSCIAGQVTG RRATINTYRV YLIFSTTTSL PQLLAIRGPW SPEEDDMLRR LVERHGARNW  240
TTIGREIPGR SGKSCRLRWC NQLSPQVERR PFTAEEDATI VRAHARLGNR WAAIARLLPG  300
RTDNAVKNHW NCSLKRKLAA ANAEPGAEDA VEFERPCKRA NLSPDSPLGS GSGSDRSDLS  360
HGASSGSGQI YRPVARSGGF EPVDCAMSQR RLGEDPLTSL SLSLPGMDNG FHHDRAHSQF  420
QVLPASPSPP PPPAAPAAAP VPAAASYPFN PEFMAAMQDL IRTEVQRYMA SVGVRAGCGG  480
AAVGADMFMP QLMEGVMRAA AERVGAVGRM Q
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-392103182108B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00476DAPTransfer from AT4G37260Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00243.1.g00520.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHF6794291e-123HF679429.1 Saccharum hybrid cultivar Co 86032 mRNA for ScMYB23 protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004965791.11e-141transcription factor MYB44
TrEMBLK3XYD01e-140K3XYD0_SETIT; Uncharacterized protein
STRINGSi006938m1e-140(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP78938154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37260.12e-58myb domain protein 73