PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc00241.1.g00320.1.sm.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | ERF | ||||||||
Protein Properties | Length: 260aa MW: 27359.7 Da PI: 4.4143 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.8 | 1.3e-18 | 36 | 87 | 1 | 56 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 ++y GVr+++ +gr++AeIrdp + + r++lg+f+taeeAa a+++a+++l+g+ Zpz_sc00241.1.g00320.1.sm.mk 36 TRYLGVRRRP-WGRYAAEIRDPAT---KERHWLGTFDTAEEAAVAYDRAARSLRGA 87 5799******.**********843...4*************************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 3.95E-29 | 36 | 95 | No hit | No description |
PROSITE profile | PS51032 | 21.562 | 37 | 94 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 8.9E-11 | 37 | 86 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.79E-21 | 37 | 94 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 8.6E-29 | 37 | 94 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.1E-32 | 37 | 100 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.4E-8 | 38 | 49 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.4E-8 | 60 | 76 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 260 aa Download sequence Send to blast |
MMNFSSYFSS SSSSDKKSSS SRRGHQQQQP DAANTTRYLG VRRRPWGRYA AEIRDPATKE 60 RHWLGTFDTA EEAAVAYDRA ARSLRGARAR TNFAYPDLPP GSSVTPYLSP DLTSGDNSAQ 120 LLQPFYAADP AAALANPAAN GAAVKDDYDY GYSDADINSL MDDIAIPDDL SAMGGDCGGA 180 MMDMSSMYGT GAANAGAGGG WCDASEFGGY GAGASTTAPG AHGMYFEEGH VHSPLFSPMP 240 AVDDACADGF QLGGSSSYYY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 4e-18 | 38 | 93 | 6 | 62 | ATERF1 |
3gcc_A | 4e-18 | 38 | 93 | 6 | 62 | ATERF1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc00241.1.g00320.1.sm.mk |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU974106 | 1e-129 | EU974106.1 Zea mays clone 439808 AP2 domain containing protein mRNA, complete cds. | |||
GenBank | KJ727670 | 1e-129 | KJ727670.1 Zea mays clone pUT5597 AP2-EREBP transcription factor (EREB91) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001152173.1 | 1e-105 | AP2 domain containing protein | ||||
TrEMBL | A0A3L6Q9Q7 | 1e-103 | A0A3L6Q9Q7_PANMI; Ethylene-responsive transcription factor LEP-like | ||||
TrEMBL | B6UA41 | 1e-103 | B6UA41_MAIZE; AP2 domain containing protein | ||||
STRING | Pavir.Gb01913.1.p | 1e-116 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1885 | 33 | 97 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G13910.1 | 2e-24 | ERF family protein |