PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc00238.1.g00510.1.am.mkhc | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | NAC | ||||||||
Protein Properties | Length: 299aa MW: 33546.1 Da PI: 7.8577 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 165.4 | 2e-51 | 14 | 146 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk....lelee....vikevdiykvePwdLpkkvkaeekewyfFskrdkkyatg 71 lppGfrFhP+d+elv +yL+kk++g ++ ++ +vd++k+ePwdLp + + kewyf+s rd+kyatg Zpz_sc00238.1.g00510.1.am.mkhc 14 LPPGFRFHPQDDELVLDYLAKKLHGGGgslvVT--IygcpTMVDVDLNKCEPWDLPDIACIGGKEWYFYSLRDRKYATG 90 79**********************999776522..13443699*************6555689**************** PP NAM 72 krknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +r+nrat+sgyWkatgkd+++ + kg lvg++ktLvfy+grapkg+kt+Wvmhe+r+ Zpz_sc00238.1.g00510.1.am.mkhc 91 QRTNRATESGYWKATGKDRPISR-KGLLVGMRKTLVFYQGRAPKGKKTEWVMHEFRM 146 *********************99.999****************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 5.23E-61 | 4 | 169 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 55.39 | 14 | 169 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.0E-25 | 15 | 146 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 299 aa Download sequence Send to blast |
MAVMNSLSMV EARLPPGFRF HPQDDELVLD YLAKKLHGGG GSLVVTIYGC PTMVDVDLNK 60 CEPWDLPDIA CIGGKEWYFY SLRDRKYATG QRTNRATESG YWKATGKDRP ISRKGLLVGM 120 RKTLVFYQGR APKGKKTEWV MHEFRMEGQG DPTKVPFKED WVLCRVFYKS RATIAKPSPE 180 SSSYNVDTST TSLPPLIDNY NISFGQPAGS VQNLEGYDQV PCFSNNPSQP PSSMNVPMPS 240 AMAADQEQHM GKSIKDVLMS QLSRFEGNVK TEAPQSKFPQ DGFEYLAESG FTQMWNSFN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 9e-50 | 10 | 170 | 11 | 169 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc00238.1.g00510.1.am.mkhc |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by auxin. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022681432.1 | 0.0 | NAC domain-containing protein 21/22 | ||||
Swissprot | Q84TE6 | 2e-87 | NAC22_ARATH; NAC domain-containing protein 21/22 | ||||
TrEMBL | A0A1E5VPB2 | 0.0 | A0A1E5VPB2_9POAL; NAC domain-containing protein 21/22 | ||||
STRING | Pavir.J36955.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1012 | 37 | 138 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G56010.2 | 2e-87 | NAC domain containing protein 1 |