PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00237.1.g00110.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 321aa    MW: 34674.5 Da    PI: 7.3935
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00237.1.g00110.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.91.1e-17145195155
                           AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                   ++y+GVr ++++grW+AeIrdp+    + +r++lg++ taeeAa+a+++ +++++g
  Zpz_sc00237.1.g00110.1.am.mk 145 KKYRGVR-NRSSGRWAAEIRDPR----QgRRVWLGTYCTAEEAARAYDREARRIRG 195
                                   59****9.8889*********94....25*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.23E-27145205No hitNo description
Gene3DG3DSA:3.30.730.101.3E-29146204IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-20146203IPR016177DNA-binding domain
SMARTSM003806.2E-36146209IPR001471AP2/ERF domain
PfamPF008472.2E-10146195IPR001471AP2/ERF domain
PROSITE profilePS5103222.286146203IPR001471AP2/ERF domain
PRINTSPR003676.6E-8147158IPR001471AP2/ERF domain
PRINTSPR003676.6E-8169185IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MCGGAILSEL VPARVHRRVT AATLWPAAGR TSKRKAGADD VLTDDEFEAE FQLFEDDDDG  60
DVDEEEEESP PAAPSEPGVS APRARSRAGT IRNSEPFFTL TKSGNARFSS SAHARVRPVV  120
STPSRRSSPS KKPRVAGAGP GASKKKYRGV RNRSSGRWAA EIRDPRQGRR VWLGTYCTAE  180
EAARAYDREA RRIRGNSARL NFPELSEGQG VRTPAVVIDL NLPAVSDDDL HCAAGGEDTM  240
DVDAASSGNE RFESVVSELT NGGAITGAAR AAGALQYAAM ISECDRQMEQ IAALKRDIEK  300
REARLAARRE QLLRLISPAL D
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-19136211481Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00237.1.g00110.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0370711e-51BT037071.1 Zea mays full-length cDNA clone ZM_BFb0153L12 mRNA, complete cds.
GenBankKJ7275481e-51KJ727548.1 Zea mays clone pUT5408 AP2-EREBP transcription factor (EREB179) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004985472.12e-76ethylene-responsive transcription factor RAP2-12
TrEMBLK4ACP05e-81K4ACP0_SETIT; Uncharacterized protein
STRINGSi036647m8e-82(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP136642229
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16770.13e-15ethylene-responsive element binding protein