PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00237.1.g00090.1.sm.mkhc
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 328aa    MW: 35725.6 Da    PI: 5.1638
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00237.1.g00090.1.sm.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.61.5e-18109158255
                             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                     +++G+r+++ +g+W+AeIrdp     + +r++lg+f tae+Aa+a++  +++l+g
  Zpz_sc00237.1.g00090.1.sm.mkhc 109 HFRGIRQRP-WGKWAAEIRDPH----KgTRVWLGTFNTAEDAARAYDVEARRLRG 158
                                     69*******.**********72....35*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.107.5E-32108166IPR001471AP2/ERF domain
PfamPF008473.2E-11109158IPR001471AP2/ERF domain
PROSITE profilePS5103223.42109166IPR001471AP2/ERF domain
CDDcd000188.37E-29109168No hitNo description
SMARTSM003801.7E-35109172IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-21109167IPR016177DNA-binding domain
PRINTSPR003672.8E-11110121IPR001471AP2/ERF domain
PRINTSPR003672.8E-11132148IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009873Biological Processethylene-activated signaling pathway
GO:0034059Biological Processresponse to anoxia
GO:0071456Biological Processcellular response to hypoxia
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MCGGAILAEL IPPTRRAASR PVTAGGNLWP ASSENGGRGR DNKKHVAEID DFEAAFDEFD  60
DDFDEVEEDG DYGYDGSRAR PFVFASKPAF SSAHDGRAAR QRKRGSRRHF RGIRQRPWGK  120
WAAEIRDPHK GTRVWLGTFN TAEDAARAYD VEARRLRGSK AKVNFPAAGA MPRRAKARPA  180
PKAQPPPAAA QLASLGGQKK KQEELVAEPE TMMAAFNMDN LLDLTFPAAP PVTASSFTDS  240
ARSESGAPVK KQRTDHSSDG SATLELTDEL EFDPFMFFQL PYMDGGYESI DSLFAGGEAG  300
QDVNTVNSDM NGAGLWSFDE FPIDGAIF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-22108166463ATERF1
3gcc_A4e-22108166463ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional activator that may be involved in defense signaling pathway. Binds in vitro to the DNA sequence 5'-AGCCGCC-3' of the GCC-box element found in pathogenesis-related (PR) gene promoters. The transcriptional activation is enhanced in vitro by the presence of MPK12/BWMK1. {ECO:0000269|PubMed:12913152}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00230DAPTransfer from AT1G72360Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00237.1.g00090.1.sm.mkhc
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0344343e-81BT034434.1 Zea mays full-length cDNA clone ZM_BFc0170J03 mRNA, complete cds.
GenBankBT0393003e-81BT039300.1 Zea mays full-length cDNA clone ZM_BFc0004M21 mRNA, complete cds.
GenBankBT0631743e-81BT063174.1 Zea mays full-length cDNA clone ZM_BFc0035E09 mRNA, complete cds.
GenBankEU9414383e-81EU941438.1 Zea mays clone 1452173 mRNA sequence.
GenBankEU9702443e-81EU970244.1 Zea mays clone 342610 root abundant factor mRNA, complete cds.
GenBankKJ7269383e-81KJ726938.1 Zea mays clone pUT3484 AP2-EREBP transcription factor (EREB180) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025791485.11e-118ethylene-responsive transcription factor 1-like
RefseqXP_025791486.11e-118ethylene-responsive transcription factor 1-like
SwissprotQ6K7E65e-32ERF1_ORYSJ; Ethylene-responsive transcription factor 1
TrEMBLA0A0A9VK361e-130A0A0A9VK36_ARUDO; Uncharacterized protein
STRINGPavir.Ib00526.1.p1e-125(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79873040
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72360.21e-28ERF family protein
Publications ? help Back to Top
  1. Kim CY, et al.
    Identification of rice blast fungal elicitor-responsive genes by differential display analysis.
    Mol. Plant Microbe Interact., 2000. 13(4): p. 470-4
    [PMID:10755311]
  2. Koo SC, et al.
    OsBWMK1 mediates SA-dependent defense responses by activating the transcription factor OsWRKY33.
    Biochem. Biophys. Res. Commun., 2009. 387(2): p. 365-70
    [PMID:19607808]
  3. Iwamoto M,Takano M
    Phytochrome-regulated EBL1 contributes to ACO1 upregulation in rice.
    Biotechnol. Lett., 2011. 33(1): p. 173-8
    [PMID:20872166]
  4. Serra TS, et al.
    OsRMC, a negative regulator of salt stress response in rice, is regulated by two AP2/ERF transcription factors.
    Plant Mol. Biol., 2013. 82(4-5): p. 439-55
    [PMID:23703395]
  5. Jisha V, et al.
    Overexpression of an AP2/ERF Type Transcription Factor OsEREBP1 Confers Biotic and Abiotic Stress Tolerance in Rice.
    PLoS ONE, 2015. 10(6): p. e0127831
    [PMID:26035591]
  6. Lourenço TF, et al.
    The Rice E3-Ubiquitin Ligase HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENE1 Modulates the Expression of ROOT MEANDER CURLING, a Gene Involved in Root Mechanosensing, through the Interaction with Two ETHYLENE-RESPONSE FACTOR Transcription Factors.
    Plant Physiol., 2015. 169(3): p. 2275-87
    [PMID:26381316]