PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00237.1.g00070.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 328aa    MW: 35050.4 Da    PI: 4.4431
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00237.1.g00070.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.41.7e-1895144255
                           AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                   +y+GVr+++ +g+W+AeIrdp+    +  r++lg++ +ae Aa+a++aa++ ++g
  Zpz_sc00237.1.g00070.1.am.mk  95 QYRGVRRRP-WGKWAAEIRDPV----KgVRVWLGTYSSAEAAARAYDAAARDIRG 144
                                   69*******.**********75....44**********************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.69E-1894154No hitNo description
SuperFamilySSF541714.71E-2295153IPR016177DNA-binding domain
PfamPF008475.3E-1295144IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.2E-3195153IPR001471AP2/ERF domain
PROSITE profilePS5103224.69895152IPR001471AP2/ERF domain
SMARTSM003801.2E-3795158IPR001471AP2/ERF domain
PRINTSPR003672.5E-1096107IPR001471AP2/ERF domain
PRINTSPR003672.5E-10118134IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MCGGAILAEL IPSAPARLHK PGHLWPAAAT TSNDKRQRRK ADDFEAAFRD FDDDNSKDDA  60
EMAEAEEVAE SKPFVFRAAP SANGHGGGRR KPPAQYRGVR RRPWGKWAAE IRDPVKGVRV  120
WLGTYSSAEA AARAYDAAAR DIRGSRAKLN FPETFSSASD SAPAGRKRAR AVPAAPVIDL  180
VFDEVEEDHA ASVKHEAEAS QSSDDSGHAL LPDFSWQGMS ALDFAVAQPA LDVEPAGAGK  240
RMRTEETPAE RAGDEEASPA SSESDALFDA FLFCDQYPFF GGGGGGAYES LDSLFSADAV  300
QGGSAADEGM GLWSFDDDCL LVEDNLSF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-1995157568ATERF1
3gcc_A1e-1995157568ATERF1
5wx9_A1e-19941591379Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1164170GRKRARA
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00237.1.g00070.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0685514e-58BT068551.1 Zea mays full-length cDNA clone ZM_BFb0310P02 mRNA, complete cds.
GenBankEU9557154e-58EU955715.1 Zea mays clone 1543173 ethylene-responsive element binding protein 2 mRNA, complete cds.
GenBankEU9559814e-58EU955981.1 Zea mays clone 1554709 ethylene-responsive element binding protein 2 mRNA, complete cds.
GenBankKJ7276124e-58KJ727612.1 Zea mays clone pUT5520 AP2-EREBP transcription factor (EREB182) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025797880.11e-101ethylene-responsive transcription factor ERF073-like
TrEMBLA0A2T7CGR11e-100A0A2T7CGR1_9POAL; Uncharacterized protein
STRINGSi036118m8e-89(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP43712654
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72360.28e-23ERF family protein