PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00236.1.g00260.1.sm.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family AP2
Protein Properties Length: 635aa    MW: 68462.6 Da    PI: 6.5356
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00236.1.g00260.1.sm.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP230.11.2e-09301344155
                           AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                   s+y+GV++++++gr++A+++d      +       ++t+++Aa+a++ a++k++g
  Zpz_sc00236.1.g00260.1.sm.mk 301 SQYRGVTRHRWTGRYEAHLWD------NSG-----YDTEDKAARAYDLAALKYWG 344
                                   78*******************......344.....9**99*************98 PP
2AP244.24.8e-14387438155
                           AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                   s y+GV+++++ grW A+I  +     +k  +lg++ t e+Aa+a++ a+ k++g
  Zpz_sc00236.1.g00260.1.sm.mk 387 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTYSTQEDAAEAYDVAAIKFRG 438
                                   57****************988532...5************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.56E-16301352No hitNo description
SuperFamilySSF541714.25E-13301354IPR016177DNA-binding domain
PfamPF008471.4E-7301344IPR001471AP2/ERF domain
SMARTSM003807.8E-20302358IPR001471AP2/ERF domain
PROSITE profilePS5103214.276302352IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.9E-10302353IPR001471AP2/ERF domain
PRINTSPR003673.7E-6303314IPR001471AP2/ERF domain
CDDcd000184.76E-24387448No hitNo description
SuperFamilySSF541712.29E-17387447IPR016177DNA-binding domain
PfamPF008472.1E-9387438IPR001471AP2/ERF domain
SMARTSM003801.1E-33388452IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.6E-18388446IPR001471AP2/ERF domain
PROSITE profilePS5103218.927388446IPR001471AP2/ERF domain
PRINTSPR003673.7E-6428448IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007276Biological Processgamete generation
GO:0010492Biological Processmaintenance of shoot apical meristem identity
GO:0042127Biological Processregulation of cell proliferation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 635 aa     Download sequence    Send to blast
MASSSNRLGF SLSSHMAMEP PSSSVSVHAQ HLPAPASSTM SPSPHNTAPC NFLFSPSAQM  60
AAPSHGYYYL GGAYGDGSTT AGVYYSHPNL PVMPVKSDGS LCNMEGHYCH PASLPLIGIL  120
VMKLCTLSNK PALLCMDNEA GMMALSSPKL EDFWGGGHAT ATYYSHQDVG QEEDDASKSY  180
EYHQIVPYNF QPLTGAEMLQ DAAAPMEETM AAAKDLVVTD YGGCYTNGEM QPLSLSMTSP  240
GPQSSGCVSA APQQHQITAL AAEAQGGSNG GGEQCKRGTG KGGHKQPVHR KSIDTFGQRT  300
SQYRGVTRHR WTGRYEAHLW DNSGYDTEDK AARAYDLAAL KYWGPATSIN FPLEHYREEL  360
EEMKTMTRFE YVAHLRRRSS GFSRGASIYR GVTRHHQHGR WQARIGRVAG NKDLYLGTYS  420
TQEDAAEAYD VAAIKFRGVN AVTNFDITRY DVEKIMESNV LLPGEEARKV KAIVPAMPHN  480
SGWELNPTGE ACTEWRMVVL GSHQETVAYA EADVLQNGIM GRGGDPNPSM HGVVGLDVEC  540
QAQPDLDGSG CRTTGGVSFS NSSTLVISLG NSREGIPAER LGLAMLYNKH PNAAVSLGTI  600
SPWTQMQAPV TASHMLKPPS AAVSHLPVFA GWADA
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of adventitious (crown) root formation by promoting its initiation. Promotes adventitious root initiation through repression of cytokinin signaling by positively regulating the two-component response regulator RR1. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1. {ECO:0000269|PubMed:21481033}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00088SELEXTransfer from AT4G37750Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00236.1.g00260.1.sm.mk
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin. {ECO:0000269|PubMed:21481033}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022678556.10.0AP2-like ethylene-responsive transcription factor ANT isoform X1
RefseqXP_025796858.10.0AP2-like ethylene-responsive transcription factor CRL5
SwissprotQ84Z021e-119CRL5_ORYSJ; AP2-like ethylene-responsive transcription factor CRL5
TrEMBLA0A0A9LT820.0A0A0A9LT82_ARUDO; Uncharacterized protein
STRINGSi034722m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP94838133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37750.11e-106AP2 family protein
Publications ? help Back to Top
  1. Kitomi Y, et al.
    The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling.
    Plant J., 2011. 67(3): p. 472-84
    [PMID:21481033]
  2. Li P,Xue H
    Structural characterization and expression pattern analysis of the rice PLT gene family.
    Acta Biochim. Biophys. Sin. (Shanghai), 2011. 43(9): p. 688-97
    [PMID:21807632]