PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00235.1.g00460.1.am.mkhc
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family CO-like
Protein Properties Length: 446aa    MW: 48739.6 Da    PI: 4.8842
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00235.1.g00460.1.am.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box201.4e-064485540
                        zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                                     C+ +++++   +C+++   lC +C    H+       Ht++
  Zpz_sc00235.1.g00460.1.am.mkhc 44 LCDFCGKQRSMVYCRSDAASLCLSCDRDVHSAnalsqrHTRT 85
                                    7*****************************657888888876 PP
2zf-B_box26.71.2e-0887128540
                        zf-B_box   5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 
                                      C++++++++   C +++  lC++C   +H        H+++
  Zpz_sc00235.1.g00460.1.am.mkhc  87 LCDRCSSQPAAVRCLEDNASLCQNCDWGGHDAasgasgHKRQ 128
                                     7*****************************446777788876 PP
3CCT621.9e-21390433144
                             CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                                     R+ al+RYkeK+k+RkF+KkirY+sRKa+A++R RvKGrF k+ 
  Zpz_sc00235.1.g00460.1.am.mkhc 390 RDSALSRYKEKKKRRKFDKKIRYASRKARADTRRRVKGRFIKAG 433
                                     899*************************************9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.8694087IPR000315B-box-type zinc finger
SMARTSM003364.4E-124087IPR000315B-box-type zinc finger
CDDcd000213.53E-74387No hitNo description
PROSITE profilePS501199.38583130IPR000315B-box-type zinc finger
PfamPF006433.4E-687129IPR000315B-box-type zinc finger
CDDcd000211.55E-687130No hitNo description
SMARTSM003360.03888130IPR000315B-box-type zinc finger
PfamPF062038.6E-17390432IPR010402CCT domain
PROSITE profilePS5101715.428390432IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 446 aa     Download sequence    Send to blast
MSTCKYHIGL LSSIVEERKA RSPLSSTEQL VEFPKILAWI MAVLCDFCGK QRSMVYCRSD  60
AASLCLSCDR DVHSANALSQ RHTRTLLCDR CSSQPAAVRC LEDNASLCQN CDWGGHDAAS  120
GASGHKRQAI NCYSGCPSSA ELSRIWSFVM DIPTVAAEPD CEDGISMMNI DDSGVSNHCV  180
TMDDSRLLEI ANTTLMSDPP SGANLKPLIG SSSGDETNTL LLATDQPTGP VPVMPKIPDA  240
TINDKFNDGS IYEDLCVDDA DLTFENYEEL FGTCHIQAEQ LFDDAGIDSY FEMEEMLPAD  300
SNEEHKYMQL ECSNMVSADS AMSNPGAKAD STLCIPVRQV KSSLSHSFSG LTGESSAGDH  360
QDCGVSPTLN MGEPPWRLPG PDGSCGGGSR DSALSRYKEK KKRRKFDKKI RYASRKARAD  420
TRRRVKGRFI KAGEAYDYDP LSPRSY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1399403KKKRR
2399404KKKRRK
3400404KKRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00235.1.g00460.1.am.mkhc
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025827948.10.0zinc finger protein CONSTANS-LIKE 9-like
SwissprotQ9SSE51e-118COL9_ARATH; Zinc finger protein CONSTANS-LIKE 9
TrEMBLA0A3L6QCT50.0A0A3L6QCT5_PANMI; Zinc finger protein CONSTANS-LIKE 9
STRINGSi017374m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20793788
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07650.41e-103CONSTANS-like 9