PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc00234.1.g00370.1.sm.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 316aa MW: 33862.1 Da PI: 9.4475 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 37 | 5.8e-12 | 164 | 193 | 27 | 56 |
HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 27 aeereeLAkklgLterqVkvWFqNrRakek 56 +++ LA++lgL rqV vWFqNrRa+ k Zpz_sc00234.1.g00370.1.sm.mk 164 SKQKVALANRLGLRPRQVEVWFQNRRARTK 193 678999**********************98 PP | |||||||
2 | HD-ZIP_I/II | 92 | 6.7e-30 | 164 | 229 | 26 | 92 |
HD-ZIP_I/II 26 perKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 +++Kv+la++Lgl+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l++en+rLeke ++Lr +lk Zpz_sc00234.1.g00370.1.sm.mk 164 SKQKVALANRLGLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRWCERLADENKRLEKELADLR-KLK 229 79************************************************************9.665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 13.928 | 115 | 195 | IPR001356 | Homeobox domain |
SMART | SM00389 | 4.3E-11 | 117 | 199 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 5.72E-12 | 118 | 203 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 8.71E-12 | 119 | 196 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.9E-16 | 119 | 198 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 2.2E-9 | 164 | 193 | IPR001356 | Homeobox domain |
PRINTS | PR00031 | 4.6E-5 | 166 | 175 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 170 | 193 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 4.6E-5 | 175 | 191 | IPR000047 | Helix-turn-helix motif |
SMART | SM00340 | 7.5E-19 | 195 | 238 | IPR003106 | Leucine zipper, homeobox-associated |
Pfam | PF02183 | 8.2E-9 | 195 | 229 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 316 aa Download sequence Send to blast |
MMPQQSLDLG LSLGGLASQG SLSSSTTSGQ LSPWAAALNS VVGDARREPQ RHAAADPAGH 60 HGTTMRASTS PDHSVLSSDD SGSNKRDREE LERTGSGGVV RGAAAGSDEE DGADGAGGRK 120 KLRLSKDQAA VLEECFKSHS TLNPVRIFSL LVAVADVLSP FVGSKQKVAL ANRLGLRPRQ 180 VEVWFQNRRA RTKLKQTEVD CEYLKRWCER LADENKRLEK ELADLRKLKA APPQATGAMQ 240 PSSATLTMCP SCRRVATTAS NPQQQQQQCH PKSNVLTTAG NVLPSHCQFF PAAAVDRAGQ 300 STWNAAAAPL VTRELF |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 187 | 195 | RRARTKLKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}. | |||||
UniProt | Probable transcription factor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc00234.1.g00370.1.sm.mk |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FP093288 | 1e-82 | FP093288.1 Phyllostachys edulis cDNA clone: bphylf053m07, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025811981.1 | 1e-116 | homeobox-leucine zipper protein HOX2-like | ||||
Swissprot | Q5VPE3 | 8e-89 | HOX2_ORYSJ; Homeobox-leucine zipper protein HOX2 | ||||
Swissprot | Q84U86 | 8e-89 | HOX2_ORYSI; Homeobox-leucine zipper protein HOX2 | ||||
TrEMBL | A0A3L6S0Z1 | 1e-119 | A0A3L6S0Z1_PANMI; Homeobox-leucine zipper protein HOX2-like | ||||
STRING | Pavir.J26517.1.p | 1e-115 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3842 | 33 | 76 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06710.1 | 1e-51 | homeobox from Arabidopsis thaliana |
Publications ? help Back to Top | |||
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