PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc00228.1.g00060.1.am.mk

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

GeBP

Protein Properties

Length: 895aa MW: 97217 Da PI: 10.2312

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc00228.1.g00060.1.am.mk	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	35.6	2.6e-11	569	657	3	97
DUF573 3 fqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksis.fkvsksqlveKirrLKkKfkkkvkkaksgkepsfsk 82 + rlws+eD i +L +l +++g p+ d + v++s++ + s s+l e++rrLK++++k v+k + s+ Zpz_sc00228.1.g00060.1.am.mk 569 APRLWSKEDSIKVLEALAAHVKSEGRLPKTD--ILLAAVRDSLDrKDCSYSDLYERVRRLKERYEKTVNK-----GVLPSE 642 579***************99999776665..58999*72579*******************9.....344456 PP DUF573 83 ehdqkifelskkiWg 97 e++ ++ +ls+ +Wg Zpz_sc00228.1.g00060.1.am.mk 643 EDELQMHNLSEAVWG 657 666789999999998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	4.9E-15	570	657	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 895 aa Download sequence Send to blast
MAGCGKMAGA YLILLLVAMA ATSSSSSRAY QLQDLKEEIM HECRFYINKN LGTWNPSDHS 60 VCDQFTEADK EKIEVLKWVK AVRVCRNPLP VGTDCAGYPV PPLRLLGRPH RYTGRTPPRT 120 RSASVSAASP LRCPLVPSPS PAMHAWLPHD GGMSRFCLAW PRHCTLPRTR GAHGLFDNDV 180 CGGRRTAGVE PNRRVRLVLC AGARGRLRSG RAXXXXRAHV GSAAGRSARE GARAGLWQGA 240 PRIRGATCVT VPQMAQRIQG APCGSCNGMR QPEQSISNIV ILIADPAEFP VSAARDMASG 300 LSPARRWRAR WWINLPLALD MGYRDGKKNP PPAVDATVRV SRSLPRFHPT LPFRRQSLAL 360 APMARKRRAP SPAPPPPPPQ ESSSETGSDT EEEEDSPRAA ASKKQPQNPQ LQALAAAANG 420 ADSDADTDAD LQAFQMRRVT RSPAKPGAPT PQPGTDADEE EKDGESSESE PEVPDPVPKK 480 AAVAKKAKAV EEDKKRAAPE AAPSRKGKKV KAEPPASPTG KGKKAKAEPE KPAPEATPSG 540 KAKKPGGKPE KSGLDSTPPS TKSEKSARAP RLWSKEDSIK VLEALAAHVK SEGRLPKTDI 600 LLAAVRDSLD RKDCSYSDLY ERVRRLKERY EKTVNKGVLP SEEDELQMHN LSEAVWGEKA 660 KEAIAAAAAS QNGSTVTDSK KGQANKEKMD GNSRGDTSKE VVNQNGGTRK GGKKGQAINE 720 NPDMDVKRKI FKEDSATGTS NKTKKQGNEK EELGKSVKNG TSNETPTKNG DTLTKRKRGK 780 MVPKEASTDR QNVGSQAEDA THPEEEEIGA AIQGMRRSFD ELQNLYPSLA WSVERMAVQH 840 PCGETLKRAF EFIHDDKANA LESKFKKQRI SDVKVHVRRL DISKEVLNML LSPAD

Sequence ? help Back to Top

Protein Sequence Length: 895 aa Download sequence Send to blast

MAGCGKMAGA YLILLLVAMA ATSSSSSRAY QLQDLKEEIM HECRFYINKN LGTWNPSDHS  60
VCDQFTEADK EKIEVLKWVK AVRVCRNPLP VGTDCAGYPV PPLRLLGRPH RYTGRTPPRT  120
RSASVSAASP LRCPLVPSPS PAMHAWLPHD GGMSRFCLAW PRHCTLPRTR GAHGLFDNDV  180
CGGRRTAGVE PNRRVRLVLC AGARGRLRSG RAXXXXRAHV GSAAGRSARE GARAGLWQGA  240
PRIRGATCVT VPQMAQRIQG APCGSCNGMR QPEQSISNIV ILIADPAEFP VSAARDMASG  300
LSPARRWRAR WWINLPLALD MGYRDGKKNP PPAVDATVRV SRSLPRFHPT LPFRRQSLAL  360
APMARKRRAP SPAPPPPPPQ ESSSETGSDT EEEEDSPRAA ASKKQPQNPQ LQALAAAANG  420
ADSDADTDAD LQAFQMRRVT RSPAKPGAPT PQPGTDADEE EKDGESSESE PEVPDPVPKK  480
AAVAKKAKAV EEDKKRAAPE AAPSRKGKKV KAEPPASPTG KGKKAKAEPE KPAPEATPSG  540
KAKKPGGKPE KSGLDSTPPS TKSEKSARAP RLWSKEDSIK VLEALAAHVK SEGRLPKTDI  600
LLAAVRDSLD RKDCSYSDLY ERVRRLKERY EKTVNKGVLP SEEDELQMHN LSEAVWGEKA  660
KEAIAAAAAS QNGSTVTDSK KGQANKEKMD GNSRGDTSKE VVNQNGGTRK GGKKGQAINE  720
NPDMDVKRKI FKEDSATGTS NKTKKQGNEK EELGKSVKNG TSNETPTKNG DTLTKRKRGK  780
MVPKEASTDR QNVGSQAEDA THPEEEEIGA AIQGMRRSFD ELQNLYPSLA WSVERMAVQH  840
PCGETLKRAF EFIHDDKANA LESKFKKQRI SDVKVHVRRL DISKEVLNML LSPAD

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc00228.1.g00060.1.am.mk

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025824313.1	1e-129	recombination repair protein 1-like
TrEMBL	A0A3L6QKN4	1e-136	A0A3L6QKN4_PANMI; Hepatoma-derived growth factor-related protein 2-like
STRING	Pavir.Ab01142.1.p	1e-128	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7289	27	37