PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc00227.1.g00130.1.sm.mk

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

NF-YC

Protein Properties

Length: 201aa MW: 22190.2 Da PI: 4.8559

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc00227.1.g00130.1.sm.mk	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	151	2.2e-47	53	155	2	101
NF-YC 2 lksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdi 79 l++fwe+q i+ +tdfkn +lPlarikki++adedv+mi+ ea ++++acelfilelt rsw ha+en+rrtl+ksdi Zpz_sc00227.1.g00130.1.sm.mk 53 LQAFWEEQereIKATTDFKNLNLPLARIKKIMRADEDVRMIAVEALFVFARACELFILELTHRSWAHAQENQRRTLQKSDI 133 89**99988999*************************************************************** PP NF-YC 80 aaavtrtdifdflvdivprdel 101 aaa++rt++fdflvdivprd+ Zpz_sc00227.1.g00130.1.sm.mk 134 AAAIARTEVFDFLVDIVPRDDA 155 *****************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	4.86E-28	50	146	IPR009072	Histone-fold
Pfam	PF00808	4.7E-20	74	137	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
Gene3D	G3DSA:1.10.20.10	7.5E-35	75	152	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 201 aa Download sequence Send to blast
MDPSNSSTPP PHPVMGAPVA YPPAAYPPGA PAYDPQFYAP PPAQQAVAAQ QKLQAFWEEQ 60 EREIKATTDF KNLNLPLARI KKIMRADEDV RMIAVEALFV FARACELFIL ELTHRSWAHA 120 QENQRRTLQK SDIAAAIART EVFDFLVDIV PRDDAKDAEA AAAAAAAAIP YPVAAVPSGQ 180 LVSLATDPLA YYYFPRHWDF D

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_B	3e-46	60	152	3	95	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	124	130	RRTLQKS

Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc00227.1.g00130.1.sm.mk

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FP100449	1e-122	FP100449.1 Phyllostachys edulis cDNA clone: bphyst023f20, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002445949.1	2e-67	nuclear transcription factor Y subunit C-6
Swissprot	Q9XE33	1e-59	NFYC6_ORYSJ; Nuclear transcription factor Y subunit C-6
TrEMBL	C5YJA9	4e-66	C5YJA9_SORBI; Uncharacterized protein
STRING	Sb07g028600.1	6e-67	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3856	36	76

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G54830.3	2e-50	nuclear factor Y, subunit C3

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Kim SK, et al. OsNF-YC2 and OsNF-YC4 proteins inhibit flowering under long-day conditions in rice. Planta, 2016. 243(3): p. 563-76 [PMID:26542958]