PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00223.1.g00240.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GeBP
Protein Properties Length: 617aa    MW: 68259.7 Da    PI: 10.2531
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00223.1.g00240.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573926.7e-29362459297
                        DUF573   2 lfqrlwseeDeivlLqGlidfkaktgk..spsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsf 80 
                                   +++rlws+ De+v+L+Gl  ++ak+g+   ++ di++++  + + +s+kvs++ql++K+rrLK+K+++  +++k+g+ep+f
  Zpz_sc00223.1.g00240.1.am.mk 362 RPSRLWSQGDELVILRGLAAYRAKHGAlpGSMYDISKLHGNIGDVLSVKVSTTQLSDKVRRLKQKYHQLATRTKNGREPNF 442
                                   679************************666677************************************************ PP

                        DUF573  81 skehdqkifelskkiWg 97 
                                    +++d++++el kk+Wg
  Zpz_sc00223.1.g00240.1.am.mk 443 PTSQDHSVYELGKKVWG 459
                                   ****************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031341.3E-23368IPR004345TB2/DP1/HVA22-related protein
PfamPF045041.9E-26364459IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 617 aa     Download sequence    Send to blast
MESTSKLDDE QWLAYWILYS FITLMEMAAE QVLYWIPLWY EVKLLFVAWL VLPQFRGASF  60
IYDRFVREQL RKHGVRLHGH GADHGPHHDL KFVYRGLPEE PSSNGTGPKD IGSRKKIQLP  120
ENSVSFGSRP SSSFSKPQSE MVSPARCMCS TRSMTEPPDS QRDRPPASQP HVARHANQSY  180
PPAPHRTNSA HGHRTPANPT PRLRNWQYRS EITIPVHTSA RRSRSRTTPC PARASASARR  240
PPFAGMAPKR PAAASGSASE ASDVDASASR HPPSPFPSKT SSPPSNPNPK SAPAPAAEDS  300
AAAGSDSGAA YDSDADHRPA PAKPAASRPM DPPRRSAPSF SESRPKRPRS AAIPAVMEHL  360
KRPSRLWSQG DELVILRGLA AYRAKHGALP GSMYDISKLH GNIGDVLSVK VSTTQLSDKV  420
RRLKQKYHQL ATRTKNGREP NFPTSQDHSV YELGKKVWGA IGSAGADADA GGVGAIVEHE  480
NTDGLHSEEE HQSGESDGDM DSWRDDHDRK NKRVKPIAMA NGNGTRFGAM SSNRRGKAEF  540
EKGKDAYPYL WETVEELSRQ HPNGVAFKKA FEMIEGTKAR GMEEKLRKFR VAEVRHQLRR  600
MELMKETVKM VLDALEG
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00223.1.g00240.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB1159137e-64AB115913.1 Triticum aestivum Wrab15 mRNA for hypothetical protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002460312.11e-137STOREKEEPER protein
TrEMBLC5X2781e-136C5X278_SORBI; Uncharacterized protein
STRINGSb02g026310.11e-136(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26713587
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00390.13e-12DNA-binding storekeeper protein-related transcriptional regulator