PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00223.1.g00020.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family HSF
Protein Properties Length: 723aa    MW: 78900.3 Da    PI: 10.4767
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00223.1.g00020.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind97.51.4e-302173392103
                                   HHHHHHHHHCTGGGTTTSEES.SSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTT....... CS
                  HSF_DNA-bind   2 Flkklyeiledeelkelisws.engnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekksks....... 74 
                                   Fl+k+y++++d+++++++sw  ++ ++fvv+ + efa+++Lp+yFkh+nf+SFvRQLn+Y  +  +    +s +       
  Zpz_sc00223.1.g00020.1.am.mk 217 FLTKTYQLVDDPATDHIVSWGdDRVSTFVVWRPPEFARDILPNYFKHNNFSSFVRQLNTYLRTTYSYVVFSSVHewtsadc 297
                                   9********************6667*********************************98666555555554445556688 PP

                                   ...........X..TTSEEEEESXXXXXXXXXXXXXXXXXXX CS
                  HSF_DNA-bind  75 ...........k..ekiweFkhksFkkgkkellekikrkkse 103
                                              k  ++ weF+++ F+kg+k+ll++i+r+k++
  Zpz_sc00223.1.g00020.1.am.mk 298 aggdvamqgfrKvvPERWEFANEFFRKGEKQLLCEIHRRKTS 339
                                   888888776651669************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.104.1E-32208331IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.8E-45213336IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.9E-25214336IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000563.1E-13217240IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.8E-26217336IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.1E-13256268IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.1E-13269281IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 723 aa     Download sequence    Send to blast
MPPSHPSKKK STKDNFDQAT PRDMHRTGRM ERCSDPRSTL HCAAALEQSL SAGDLSIDRN  60
CTGSRGARGL ERRATSIPSN DFPLLAVKRA SFKRSSGEKK WRKDGVKRGK RGERTSRKPR  120
KRTDTYSLPP PPPPARSPRQ GHAQPHLPSS LASFADSLRH RRKLKHQSPT VTCRPPPDLE  180
RSCRREGQRE RKRMERVERC GNWECDAGAQ KAVPAPFLTK TYQLVDDPAT DHIVSWGDDR  240
VSTFVVWRPP EFARDILPNY FKHNNFSSFV RQLNTYLRTT YSYVVFSSVH EWTSADCAGG  300
DVAMQGFRKV VPERWEFANE FFRKGEKQLL CEIHRRKTSS ASTASPSPSP FFAPAHFPLF  360
HHPGVQHQHH QFMADEGVVG AGVGFPHPHW REPHAATPVA TRLLALNGPA PSPLPATEGS  420
GPARAATAAV LMEENERLRR SNTALLQELA HMRKLYNDII YFVQNHVRPV APSPAAAAFL  480
QGLGLQARKK SSAAAALNNS GGSTTSSSSL TIADEPSPPT PPQQQFDKET GSGCAAAAPT  540
KLFGVQLTAA PTGAGTKRPP SPDDERPPLS PATKPRLALE SADLSLSTPS GASSPSSSAE  600
ACMLMHATVA PRFAVLDLWK FDTKRIDGDA ARTVFAFFLE AAAAAAAAAR CTLKIQPAAS  660
LAVCVGRRNR GKTSLWAGMG GWCFGFNACG VMCVSSVRFC RGRPCSSQPA VIEHHPATGE  720
FTR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hdg_A4e-162133387112Heat shock factor protein 1
5hdn_A4e-162133387112Heat shock factor protein 1
5hdn_B4e-162133387112Heat shock factor protein 1
5hdn_C4e-162133387112Heat shock factor protein 1
5hdn_D4e-162133387112Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00223.1.g00020.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2411902e-98AK241190.1 Oryza sativa Japonica Group cDNA, clone: J065120N14, full insert sequence.
GenBankAP0056552e-98AP005655.2 Oryza sativa Japonica Group genomic DNA, chromosome 9, PAC clone:P0025H07.
GenBankAP0149652e-98AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
GenBankCP0126172e-98CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015611002.11e-143heat stress transcription factor B-4c
SwissprotQ67U941e-144HFB4C_ORYSJ; Heat stress transcription factor B-4c
TrEMBLA0A0E0M1Z41e-151A0A0E0M1Z4_ORYPU; Uncharacterized protein
STRINGOPUNC09G11010.11e-152(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12137394
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.11e-75heat shock transcription factor B4