PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00222.1.g00050.1.sm.mkhc
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB_related
Protein Properties Length: 310aa    MW: 33432 Da    PI: 10.7873
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00222.1.g00050.1.sm.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.21.1e-1484128347
                                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
                 Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                     +WT+eE+  ++ + ++lG+g+W+ Ia+ + ++Rt+ q+ s+ qky
  Zpz_sc00222.1.g00050.1.sm.mkhc  84 PWTEEEHRTFLAGLEKLGKGDWRGIAKNFVTTRTPTQVASHAQKY 128
                                     8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.96877133IPR017930Myb domain
SuperFamilySSF466891.08E-1778133IPR009057Homeodomain-like
TIGRFAMsTIGR015571.8E-1880132IPR006447Myb domain, plants
SMARTSM007171.4E-1181131IPR001005SANT/Myb domain
PfamPF002491.7E-1284128IPR001005SANT/Myb domain
CDDcd001672.22E-1084129No hitNo description
Gene3DG3DSA:1.10.10.602.9E-1284127IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MRLFGVTIAP APEVDPSSQD LSPNPPLAAR EDVMRKCKSM GNLAAVAAAS VDGSGAGDGY  60
HSDDGLMQSS GKRRRAQERK KAVPWTEEEH RTFLAGLEKL GKGDWRGIAK NFVTTRTPTQ  120
VASHAQKYFL RQTNPNKKKR RSSLFDMMLG DALPVPNCHI LPSSGTKARD VVAMTKQLQN  180
SKLEVVSSSN TGNVESRVER NLPPIPPFKP TSKDSSFSKL NLMERWRTPF PFRPIPRGLE  240
GTSSIPATAN IATMATSSIP ATANIATMTL SSSLRLLSFD LDPLSGEVGA RCRGRSSGEA  300
EAASRGSRPG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1136140KKKRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00222.1.g00050.1.sm.mkhc
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001131609.11e-121uncharacterized protein LOC100192961
TrEMBLA0A0C6WCT91e-123A0A0C6WCT9_9POAL; ScMYB52 protein
STRINGGRMZM2G157306_P021e-121(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58583652
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61620.16e-38MYB_related family protein