PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00218.1.g00220.1.sm.mkhc
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 294aa    MW: 32835.2 Da    PI: 6.7877
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00218.1.g00220.1.sm.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.99e-1480125555
                                     HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                             HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                     + ++Er RR+++N+++ eLr+++P+      +K++Ka+i + A+eYI +Lq
  Zpz_sc00218.1.g00220.1.sm.mkhc  80 NIIMERDRRRKLNEKLYELRSVVPNI-----TKMDKASIIKDAIEYIEQLQ 125
                                     5689*********************7.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.13975124IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.31E-1379129No hitNo description
SuperFamilySSF474591.83E-1779140IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.1E-1180125IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.1E-1781139IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.7E-1681130IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF550218.7E-5203268No hitNo description
CDDcd048730.00254204267No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MDAAEMGDSF ENYWETQRFF DCEEFMSSIY PGSGGAGEDT MSYYDSSSPD GSHSSSAAPA  60
EFGHKAQSAG GGGVAGANKN IIMERDRRRK LNEKLYELRS VVPNITKMDK ASIIKDAIEY  120
IEQLQAEERQ MLQEVRALES AAPGHGNVGT YNYEHDEGVL LPTERRKRTK RAQSAPSLPA  180
PSATPSPPVE VLELRVSEVG DRVLVVSVTC RKRRDAMARV CRAIEELRLR VITANITSVA  240
GCLVHTVFVE VDHTDRIQMK QMIETALRVN KAYLLRQSRR MFCYEALLRK ALDP
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00218.1.g00220.1.sm.mkhc
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0407442e-65AB040744.1 Oryza sativa RERJ1 mRNA for Transcription Factor, complete cds.
GenBankAK2422102e-65AK242210.1 Oryza sativa Japonica Group cDNA, clone: J075170K16, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004975234.11e-106transcription factor bHLH35
TrEMBLA0A1E5V0091e-108A0A1E5V009_9POAL; Transcription factor bHLH35
STRINGSi010812m1e-106(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP104438133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.12e-52bHLH family protein