PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00216.1.g00170.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 364aa    MW: 38592.3 Da    PI: 7.2404
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00216.1.g00170.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.76.2e-192671147
                                  TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
               Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                                  +g+WT+eEdell  av+++G ++W+ I ++++ gR++k+c++rw + 
  Zpz_sc00216.1.g00170.1.am.mk 26 KGSWTPEEDELLRSAVARHGARSWTVIGAEVP-GRSGKSCRLRWCNQ 71
                                  799*****************************.***********985 PP
2Myb_DNA-binding53.46e-1778122147
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                   r ++T++Ed  +v a++++G++ W+tIar +  gRt++++k++w++ 
  Zpz_sc00216.1.g00170.1.am.mk  78 RRAFTPDEDAVIVAAHARYGNK-WATIARLLH-GRTDNSVKNHWNST 122
                                   678*******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.4712176IPR017930Myb domain
SuperFamilySSF466891.08E-2824119IPR009057Homeodomain-like
SMARTSM007171.0E-152574IPR001005SANT/Myb domain
PfamPF002499.4E-192671IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.1E-232779IPR009057Homeodomain-like
CDDcd001678.29E-152870No hitNo description
SMARTSM007171.6E-1377125IPR001005SANT/Myb domain
PfamPF002491.0E-1378122IPR001005SANT/Myb domain
PROSITE profilePS5129420.45778127IPR017930Myb domain
CDDcd001672.02E-1080123No hitNo description
Gene3DG3DSA:1.10.10.604.2E-2280125IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MVVPGVDGGG GSTTKTRSPT SGPRVKGSWT PEEDELLRSA VARHGARSWT VIGAEVPGRS  60
GKSCRLRWCN QLSPGVERRA FTPDEDAVIV AAHARYGNKW ATIARLLHGR TDNSVKNHWN  120
STLRRQRRAA AAAAAGCAVT PSRVEAPPPL LALVDLKDET APVPFQPQAD PKVEKNKDVY  180
DDEEEEDDDE GDGSSEDSVL APPPKKRPCV VGNHNKLPLP LHLAAKQPPV GQTKPPHPSA  240
PAGTEPVVTS LTLSLPGGGS VDPAPTSSPQ TVTSTTAAAT NETAGKEEGP AKTRARMIEE  300
DSWLLPVMRR MIVEEVHRVM GMMQPPPGLA FSFVAEPAGW PAAGRSSGAA GTDDRAATKS  360
RRDD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C6e-332512657158MYB PROTO-ONCOGENE PROTEIN
1h89_C6e-332512657158MYB PROTO-ONCOGENE PROTEIN
1mse_C5e-33251263104C-Myb DNA-Binding Domain
1msf_C5e-33251263104C-Myb DNA-Binding Domain
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00216.1.g00170.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002439611.13e-83myb-related protein 330
TrEMBLC5YWC07e-82C5YWC0_SORBI; Uncharacterized protein
STRINGSb09g016570.11e-82(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP78938154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23290.16e-50myb domain protein 70