PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc00213.1.g00200.1.sm.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | ERF | ||||||||
Protein Properties | Length: 337aa MW: 35659.1 Da PI: 6.7506 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 55 | 2.1e-17 | 196 | 243 | 5 | 55 |
AP2 5 GVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 GVr ++ +g+++AeIrd + ng r+++g+f+t+e Aa a+++a+ +++g Zpz_sc00213.1.g00200.1.sm.mk 196 GVRKRP-WGKYAAEIRDSTRNG--ERVWIGTFDTPEAAALAYDQAAYSMRG 243 9*****.**********44465..*************************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 21.022 | 193 | 251 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.5E-7 | 194 | 205 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.15E-21 | 195 | 252 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 8.9E-31 | 196 | 257 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.5E-27 | 196 | 252 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.66E-14 | 196 | 253 | No hit | No description |
Pfam | PF00847 | 3.2E-12 | 196 | 243 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.5E-7 | 217 | 233 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 337 aa Download sequence Send to blast |
MEPHFGNGLY NGNAAYAREG QPLEQGYSPY SFTSYDGTSY SYNTASAGTG VFQPSSVCAA 60 PQPYGGSGYN HQSSLAAWVS SSSSSSFTTH HHFYQQQLHF GGGIDEYYGG QVEKAMGTVD 120 MEHVNAIMGA ASISTATTSG SSASRTYAPA SCWTMEHHGK TFTASHSPSA AIIHANAIDG 180 SSGSGGGGGD EAPLIGVRKR PWGKYAAEIR DSTRNGERVW IGTFDTPEAA ALAYDQAAYS 240 MRGPGAVLNF PVQHVQETLR DLGLSGGAAA GDSPVLELKR RHCIRRRLPK TKKAAGGQQT 300 TVTSRGHGKQ KQAASCVLEL EDLGPEYLDE LLAQSFE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 4e-26 | 181 | 251 | 2 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 278 | 292 | KRRHCIRRRLPKTKK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc00213.1.g00200.1.sm.mk |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004959050.1 | 8e-81 | ethylene-responsive transcription factor 1 | ||||
TrEMBL | C5XCK5 | 1e-89 | C5XCK5_SORBI; Uncharacterized protein | ||||
STRING | Sb02g005840.1 | 2e-90 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP277 | 37 | 249 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23240.1 | 4e-31 | ethylene response factor 1 |