PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Zpz_sc00200.1.g00260.1.sm.mkhc | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 327aa MW: 36991.7 Da PI: 6.4133 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 163.7 | 6.8e-51 | 18 | 162 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.................kvka..eekewyf 60 lppGfrFhPtdeelvv+yL++kv++++l++ +i+evd+yk++PwdLp k a ++kewyf Zpz_sc00200.1.g00260.1.sm.mkhc 18 LPPGFRFHPTDEELVVHYLCRKVARQQLPV-PIIAEVDLYKFDPWDLPDltldavadldslraraeK--AlfGRKEWYF 93 79****************************.88***************5589999999988775443..145889**** PP NAM 61 FskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 F++rd+ky++g+r+nra+ +gyWkatg dk++ k + ++ g+kk Lvfy+g+ap+g+ktdW+mheyrl Zpz_sc00200.1.g00260.1.sm.mkhc 94 FTPRDRKYPNGSRPNRAAGRGYWKATGADKPIAPKgSPKAAGIKKALVFYSGKAPRGVKTDWIMHEYRL 162 *********************************98556779**************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.4E-59 | 14 | 188 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 59.171 | 18 | 188 | IPR003441 | NAC domain |
Pfam | PF02365 | 6.8E-27 | 19 | 162 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 327 aa Download sequence Send to blast |
MVAAEGSGRR DAEAELNLPP GFRFHPTDEE LVVHYLCRKV ARQQLPVPII AEVDLYKFDP 60 WDLPDLTLDA VADLDSLRAR AEKALFGRKE WYFFTPRDRK YPNGSRPNRA AGRGYWKATG 120 ADKPIAPKGS PKAAGIKKAL VFYSGKAPRG VKTDWIMHEY RLADADRGPG KKGSQKLDEW 180 VLCRLYNKKN NWEKVKVEEL QEQETAPHHR QRKEEIMDTL ADTMSDSIQT HGSEIDNAPD 240 MQNSFGDMAQ GQATVPNSMV TVKEDNDWFT DMNFDELQAS YMNMGQMVNP SLGQTVNPAA 300 GQDYHAGYLQ SISAPQMRMW QTILPPF |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 6e-91 | 10 | 194 | 7 | 174 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor involved in stress response. {ECO:0000250|UniProtKB:Q7F2L3}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Zpz_sc00200.1.g00260.1.sm.mkhc |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Induced by salt stress (PubMed:18813954, PubMed:20632034). Induced by dehydration, cold stress and methyl jasmonate (PubMed:20632034). {ECO:0000269|PubMed:18813954, ECO:0000269|PubMed:20632034}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | KM017003 | 1e-126 | KM017003.1 Miscanthus lutarioriparius NAC4 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025816775.1 | 1e-178 | NAC domain-containing protein 68-like | ||||
Swissprot | Q52QH4 | 1e-158 | NAC68_ORYSJ; NAC domain-containing protein 68 | ||||
TrEMBL | A0A220T1T2 | 0.0 | A0A220T1T2_9POAL; Stress responsive NAC transcription factor | ||||
STRING | Pavir.Ea03233.1.p | 1e-173 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5389 | 37 | 61 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G77450.1 | 1e-82 | NAC domain containing protein 32 |