PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00200.1.g00030.1.sm.mkhc
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family WOX
Protein Properties Length: 366aa    MW: 40562.7 Da    PI: 7.7233
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00200.1.g00030.1.sm.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox67.61.6e-2186146257
                                     T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                        Homeobox   2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                                     r+R+++t+ ql++Le+lF + n +ps+++++e++++l    +++e++V++WFqNrRa+ k+
  Zpz_sc00200.1.g00030.1.sm.mkhc  86 RQRWQPTPMQLQILENLFDQgNGTPSKQKIKEITAELshhgQISETNVYNWFQNRRARSKR 146
                                     89*****************99**************************************97 PP
2Wus_type_Homeobox100.71.1e-3285148265
               Wus_type_Homeobox   2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                                     ar+RW Ptp Q++iLe+l+++G  tP+k++i++itaeL+++G+i+++NV++WFQNr+aR+++kq
  Zpz_sc00200.1.g00030.1.sm.mkhc  85 ARQRWQPTPMQLQILENLFDQGNGTPSKQKIKEITAELSHHGQISETNVYNWFQNRRARSKRKQ 148
                                     789***********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.7E-1781150IPR009057Homeodomain-like
PROSITE profilePS5007114.94982147IPR001356Homeobox domain
SMARTSM003896.3E-1484151IPR001356Homeobox domain
SuperFamilySSF466893.76E-1885149IPR009057Homeodomain-like
CDDcd000861.69E-1486148No hitNo description
PfamPF000462.6E-1986146IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MEWGFRAAAA EAEERGGEPL GYVKVMTDGQ MEVLRKQISI YATICEQLVE MHRALTEHQD  60
SIAGMRFSNL YCDPLIVPGG HKITARQRWQ PTPMQLQILE NLFDQGNGTP SKQKIKEITA  120
ELSHHGQISE TNVYNWFQNR RARSKRKQAA VLPNNVESEA EADEESLTDK KPKSDMQLQQ  180
SKVVSVHNAD RISEMHHLQR DHLGGMMYGS NDNNLRSSGS SGQMSFYENI MSNPRIDQFS  240
GKVESTGLVV TSSPHFPAAF DRPWTPFYSW VGPKTAMLTN SWSLGTQSSS SPCAIAPRKR  300
HAGVPVIAAL SIRFLSPAPS SHAYGVPLTT VSPLLYPPGP LRTPPRPELS FSAQACSAEH  360
ASNTFD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1139147RRARSKRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00617PBMTransfer from AT4G35550Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00200.1.g00030.1.sm.mkhc
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8293761e-153CT829376.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA218C10, full insert sequence.
GenBankCT8293771e-153CT829377.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA244H01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002456540.11e-144WUSCHEL-related homeobox 8
SwissprotQ5QMM31e-114WOX8_ORYSJ; WUSCHEL-related homeobox 8
TrEMBLC5XN901e-143C5XN90_SORBI; Uncharacterized protein
STRINGSb03g038080.11e-144(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38983776
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35550.13e-63WUSCHEL related homeobox 13
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]